[1] "2025-04-30 00:21:21 MDT" [1] "1505B" "150629" "d180" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150629a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:21:26 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.867, ave o2scale2 = 0.78" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "356 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.867, ave o2scale2 = 0.78" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "357 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:21:26 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:21:26 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:21:43 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:21:45 MDT" [1] "reading in recalculated plot titles" [1] "Removed 357 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1079 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:21:49 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.018 co2off = 480.22 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 7.83 minutes" [1] "Shortest Cal: 3 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 6 [4,] 7 8 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 3 4 167 176 0.1705079 0.1767671 0.1743329 2 -68.96493 361.0061 1.141989 4 2 177 182 0.1774630 0.1837263 0.1812902 2 -90.10869 481.8777 1.142398 7 2 369 378 0.3791943 0.3854538 0.3830197 2 -90.00030 483.4678 1.151301 8 4 379 382 0.3903222 0.3924087 0.3920609 2 -68.83769 369.1302 1.151340 12 4 620 628 0.5884502 0.5940140 0.5919277 2 -68.77010 368.0844 1.157941 13 2 629 637 0.5947095 0.6009690 0.5987834 2 -89.91489 477.2925 1.157784 15 2 834 842 0.7964688 0.8027323 0.8001462 2 -89.87324 480.4718 1.162390 16 4 843 852 0.8034276 0.8096909 0.8072548 2 -68.73348 365.3537 1.162736 jfcv2 co2slp o2slp co2sd o2sd 3 1.269788 0.0010125896 0.4476507 0.002981235 4.9895011 4 1.270320 0.0005257801 0.5917196 0.002384302 2.3249033 7 1.280496 0.0011552341 0.7103777 0.003186088 6.6479686 8 1.280520 0.0043679022 -0.2061018 0.003093592 0.1459728 12 1.288626 -0.0008670971 1.0006632 0.002133212 2.4655915 13 1.288602 -0.0004135970 2.5823934 0.004985035 9.4555094 15 1.294174 0.0007249656 1.0851965 0.001964098 5.2048207 16 1.294499 0.0022229419 1.1645937 0.007205214 3.5202729 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 476.199 co2l1 = 1.017 co2l0 = 0" [1] "co2l0 = -197.5 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "39 out of 160 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "121 out of 953 1-min values rejected as stack air" [1] "107 out of 771 Line 1 1-min values rejected as stack air" [1] "14 out of 182 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"