[1] "2025-04-30 00:20:48 MDT" [1] "1505B" "150628" "d179" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150628a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:20:52 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.888, ave o2scale2 = 0.799" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "208 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.888, ave o2scale2 = 0.799" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "207 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:20:52 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:20:52 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:21:10 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:21:11 MDT" [1] "reading in recalculated plot titles" [1] "Removed 208 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1228 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:21:17 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.017 co2off = 468.91 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.16 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 174 183 0.1269607 0.1332245 0.1307869 3 -90.18605 485.5618 1.125756 3 4 184 193 0.1339200 0.1401852 0.1377489 3 -69.01327 363.2644 1.125980 4 5 194 203 0.1408808 0.1471401 0.1460967 NA -81.09216 439.7033 1.126216 5 3 204 212 0.1478356 0.1540949 0.1533994 3 -81.65819 474.3261 1.126183 7 4 472 481 0.3356531 0.3419132 0.3394789 2 -69.02392 365.9857 1.127491 8 2 482 491 0.3426086 0.3488828 0.3464486 2 -90.18852 484.0972 1.127606 10 2 766 774 0.5443755 0.5506352 0.5484493 3 -90.26371 483.1150 1.126257 11 4 775 784 0.5513306 0.5575903 0.5551558 3 -69.10487 370.0458 1.126092 12 3 785 794 0.5582858 0.5645453 0.5635021 3 -81.74079 473.5417 1.125976 14 4 1021 1025 0.7530593 0.7586274 0.7570032 2 -69.11817 361.7546 1.126134 15 2 1026 1031 0.7614096 0.7648905 0.7638470 2 -90.27683 480.1258 1.126207 18 4 1205 1211 0.9693970 0.9749613 0.9735699 2 -69.08498 371.5351 1.131619 19 3 1212 1217 0.9770475 0.9819156 0.9822635 2 -81.72570 450.5919 1.131545 jfcv2 co2slp o2slp co2sd o2sd 2 1.251421 -0.0010197863 0.69243037 0.0028474515 4.168982 3 1.251666 0.0032695201 0.72655153 0.0091301814 4.133031 4 1.251928 -0.0006862990 1.75857438 0.0004861359 4.592358 5 1.252074 0.0019119748 3.05226092 0.0058346781 3.487229 7 1.253178 0.0005349039 -0.15046794 0.0027934374 4.387190 8 1.253310 -0.0023504974 0.08086649 0.0065791668 4.124146 10 1.251624 -0.0007899188 2.35238661 0.0020930646 9.571464 11 1.251516 0.0024804691 2.26815083 0.0084291584 6.017223 12 1.251426 0.0014373318 -0.05063150 0.0054724286 1.733133 14 1.251323 0.0032676300 3.60049353 0.0106670736 11.746663 15 1.251549 0.0007052002 3.09738015 0.0014828666 5.458227 18 1.257215 0.0029823592 1.35975970 0.0053869054 3.702059 19 1.257037 -0.0006464950 -26.90319549 0.0025048781 19.061479 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 476.435 co2l1 = 1.017 co2l0 = 2.284" [1] "co2l0 = -200.91 co2l1 = 0.23" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "0 out of 0 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1054 1-min values rejected as stack air" [1] "0 out of 1054 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"