[1] "2025-04-30 00:20:15 MDT" [1] "1505B" "150627" "d178" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150627a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:20:19 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.881, ave o2scale2 = 0.793" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "27 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.881, ave o2scale2 = 0.793" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "26 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:20:20 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:20:20 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:20:37 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:20:38 MDT" [1] "reading in recalculated plot titles" [1] "Removed 26 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1410 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:20:43 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.018 co2off = 472.06 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.94 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 11 [5,] 12 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 119 128 0.08329867 0.08955796 0.08712383 2 -68.48830 365.1547 3 2 129 138 0.09025353 0.09651291 0.09407878 2 -89.64865 478.7301 5 2 416 425 0.29199878 0.29826736 0.29582850 3 -89.83449 478.8673 6 4 426 435 0.29896282 0.30522682 0.30279130 3 -68.67508 366.7085 7 3 436 445 0.30592222 0.31218947 0.31114297 3 -81.31288 472.3632 9 4 714 723 0.50074468 0.50700501 0.50456997 2 -68.64636 367.0267 10 2 724 733 0.50770150 0.51396076 0.51152680 2 -89.80877 476.4049 11 5 734 743 0.51465709 0.52091670 0.51987355 NA -80.72375 433.6847 13 2 1013 1022 0.70945532 0.71571557 0.71328121 3 -89.96747 479.5983 14 4 1023 1032 0.71641097 0.72267052 0.72023657 3 -68.81245 362.9947 15 3 1033 1042 0.72336589 0.72962870 0.72858570 3 -81.46175 475.0426 17 4 1300 1309 0.91820854 0.92447130 0.92203682 1 -68.99506 370.5584 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.144857 1.272062 0.0003796923 2.0830801 0.003217981 8.9778047 3 1.144754 1.271917 0.0008298295 1.5273820 0.004072301 4.1852069 5 1.136099 1.262362 0.0008877190 1.4766273 0.003412725 5.0162700 6 1.135978 1.262232 0.0007760282 1.7398387 0.005548462 5.8233118 7 1.136362 1.262680 0.0033200770 -0.3376953 0.008212811 0.7110064 9 1.139677 1.266276 0.0002881040 1.1103253 0.004953551 4.3773018 10 1.139713 1.266313 -0.0004740999 1.5263433 0.004019171 5.6227028 11 1.139490 1.266025 -0.0064902646 -1.9842341 0.004596194 4.4244872 13 1.133123 1.259177 0.0009047927 -0.9455818 0.004087765 3.0550253 14 1.132824 1.258852 0.0025185702 3.0429089 0.006652550 7.6476699 15 1.132512 1.258473 0.0009690326 -1.8070750 0.007134940 3.3814057 17 1.121773 1.246894 0.0004534569 4.0945243 0.002381804 11.8857522 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 476.068 co2l1 = 1.017 co2l0 = 1.772" [1] "co2l0 = -196.96 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "0 out of 0 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1229 1-min values rejected as stack air" [1] "0 out of 1229 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"