[1] "2025-04-30 00:19:44 MDT" [1] "1505B" "150626" "d177" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150626a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85980 63 [1] 85980 [1] 85980 [1] "testing skipping spike filter" [1] 85980 [1] 85980 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:19:48 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.87, ave o2scale2 = 0.783" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "30 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.87, ave o2scale2 = 0.783" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "30 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:19:49 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:19:49 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:20:06 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:20:08 MDT" [1] "reading in recalculated plot titles" [1] "Removed 30 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1402 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:20:10 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.018 co2off = 471.67 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.75 minutes" [1] "Shortest Cal: 6.01 minutes" [1] "Longest Cal: 9.04 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [5,] 12 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 56 60 0.03959514 0.04516311 0.04446488 3 -89.31800 477.9664 3 4 61 66 0.04655576 0.05282248 0.05177754 3 -68.13645 368.2241 4 3 67 75 0.05351921 0.05979537 0.05909714 3 -80.79098 472.7804 6 4 328 337 0.24853009 0.25478961 0.25235561 2 -68.25695 367.2256 7 2 338 347 0.25548495 0.26174499 0.25931048 2 -89.42591 483.2996 8 5 348 357 0.26244019 0.26869931 0.26765627 NA -80.33766 441.4355 10 2 627 636 0.45721875 0.46348223 0.46104618 3 -89.47436 479.4470 11 4 637 646 0.46417766 0.47044913 0.46800756 3 -68.30601 361.5141 12 3 647 656 0.47114473 0.47740770 0.47636461 3 -80.94741 470.7878 14 4 927 936 0.66592014 0.67217908 0.66974490 2 -68.26679 364.3460 15 2 937 946 0.67287474 0.67913411 0.67669968 2 -89.42797 477.5054 17 2 1227 1233 0.87669268 0.88086560 0.87947454 3 -89.52936 486.4028 18 4 1234 1243 0.88156128 0.88782063 0.88538638 3 -68.37120 363.1251 19 5 1244 1253 0.88851606 0.89477546 0.89373214 NA -80.43700 434.2869 20 3 1254 1262 0.89547106 0.90173015 0.90103471 3 -81.01797 470.9171 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.149539 1.277149 -1.237118e-04 1.34490551 0.0004506939 1.3509054 3 1.149490 1.277301 4.131800e-03 -2.79656295 0.0067092472 3.7221554 4 1.149040 1.276983 1.090556e-05 -0.55031421 0.0009189686 0.5540547 6 1.144695 1.271799 2.822588e-03 -0.10790400 0.0076572385 2.3623693 7 1.144733 1.271798 -1.051845e-03 1.96453408 0.0048732827 6.3269980 8 1.144726 1.271820 -2.933711e-03 -0.02961918 0.0020771262 0.7351523 10 1.146364 1.273720 -4.542998e-04 1.80265505 0.0016402955 4.8683747 11 1.146606 1.273971 1.969354e-03 2.16813592 0.0068033144 6.8127325 12 1.146963 1.274404 6.758173e-04 0.02859390 0.0042178322 1.9944895 14 1.153976 1.283278 6.411004e-04 2.56842097 0.0027294151 6.6825827 15 1.154062 1.283383 -2.941330e-04 0.74179632 0.0028098202 3.5432041 17 1.150170 1.278946 -1.173123e-03 -0.27303684 0.0020436640 3.1600197 18 1.149971 1.278579 1.963663e-03 1.49400459 0.0056392120 4.3922555 19 1.149851 1.278385 -3.494176e-03 1.93746710 0.0024748737 5.8444606 20 1.149690 1.278377 6.078379e-04 0.76198732 0.0043299262 0.7630509 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 475.569 co2l1 = 1.016 co2l0 = 2.013" [1] "co2l0 = -196.09 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "43 out of 150 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "107 out of 1209 1-min values rejected as stack air" [1] "35 out of 914 Line 1 1-min values rejected as stack air" [1] "72 out of 295 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"