[1] "2025-04-30 00:19:30 MDT" [1] "1505B" "150625" "d176" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150625a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 54206 63 [1] 54206 [1] 54206 [1] "testing skipping spike filter" [1] 54206 [1] 54206 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:19:32 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.862, ave o2scale2 = 0.775" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "34 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.862, ave o2scale2 = 0.775" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "34 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:19:32 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:19:32 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:19:37 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:19:38 MDT" [1] "reading in recalculated plot titles" [1] "Removed 34 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 868 0 TRUE" [1] "Removed 189 row(s) with -999.99 for a Licor jog SD" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:19:40 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.021 co2off = 469.78 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.64 minutes" [1] "Shortest Cal: 7.02 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 7 8 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 118 127 0.08301852 0.08927778 0.08684364 2 -67.56170 363.0080 3 2 128 137 0.08997338 0.09623316 0.09379868 2 -88.71021 477.5750 5 3 161 169 0.62294097 0.62850544 0.62780976 3 -80.43712 470.6487 6 2 170 179 0.62920081 0.63546412 0.63302737 3 -88.96452 481.1681 7 4 180 189 0.63615972 0.64242248 0.63998697 3 -67.80748 368.3836 8 5 190 199 0.64311806 0.64937737 0.64833422 NA -79.86647 445.7317 11 4 453 462 0.83092593 0.83718519 0.83475098 2 -67.99323 368.8013 12 2 463 470 0.83788082 0.84275252 0.84101144 2 -89.16198 475.8556 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.167530 1.298070 0.0017755777 1.119513250 0.005395905 2.854849 3 1.167633 1.298194 -0.0009084180 1.849961539 0.003677413 5.493005 5 1.165058 1.296255 0.0004099975 2.706835088 0.002032932 2.984575 6 1.165035 1.296044 0.0002010646 1.489378898 0.001449653 4.372868 7 1.164657 1.295600 0.0032399369 -0.007951175 0.008063015 2.855387 8 1.164494 1.295340 -0.0028086381 -0.489004194 0.001988738 1.048563 11 1.154922 1.284083 -0.0005757730 -0.689058796 0.002641939 2.777927 12 1.154801 1.283938 -0.0030838111 1.096284605 0.006404913 3.297817 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 475.111 co2l1 = 1.017 co2l0 = 2.398" [1] "co2l0 = -200.08 co2l1 = 0.228" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "36 out of 105 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "69 out of 565 1-min values rejected as stack air" [1] "52 out of 249 Line 1 1-min values rejected as stack air" [1] "17 out of 316 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"