[1] "2025-04-30 00:18:57 MDT" [1] "1505B" "150624" "d175" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150624a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:19:01 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.868, ave o2scale2 = 0.781" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "21 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.868, ave o2scale2 = 0.781" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "21 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:19:01 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:19:01 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:19:18 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:19:20 MDT" [1] "reading in recalculated plot titles" [1] "Removed 21 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1415 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:19:24 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.018 co2off = 475.15 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.01 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [5,] 12 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 56 65 0.03948767 0.04575067 0.04331397 3 -88.71032 476.8531 3 4 66 75 0.04644601 0.05270518 0.05027109 3 -67.54055 363.7476 4 3 76 85 0.05340055 0.05965978 0.05861650 3 -80.18299 466.2422 7 4 355 364 0.24823354 0.25449306 0.25205881 2 -67.60519 363.1915 8 2 365 374 0.25518866 0.26145159 0.25901521 2 -88.77821 479.8966 9 5 375 384 0.26214705 0.26841088 0.26736748 NA -79.68913 437.5684 11 2 655 664 0.45693108 0.46319077 0.46075639 3 -88.74439 479.0485 12 4 665 674 0.46388620 0.47014531 0.46771116 3 -67.58247 365.7386 13 3 675 684 0.47084144 0.47710069 0.47605731 3 -80.21491 481.0648 15 4 955 964 0.66565165 0.67191094 0.66947670 2 -67.60570 366.2731 16 2 965 974 0.67260631 0.67886574 0.67643156 2 -88.76181 481.3415 18 2 1236 1245 0.87434499 0.88060417 0.87817021 3 -88.77231 479.5303 19 4 1246 1255 0.88129983 0.88755935 0.88512533 3 -67.61073 363.4185 20 5 1256 1265 0.88825475 0.89451444 0.89347143 NA -79.67303 444.2130 21 3 1266 1275 0.89520978 0.90146976 0.90042635 3 -80.24812 478.1262 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.144530 1.271756 -0.0003676221 2.4100570 0.002419101 6.046333 3 1.144380 1.271592 0.0025328751 1.6251392 0.007717851 6.328574 4 1.144587 1.271829 -0.0013946273 -6.8862934 0.003706359 9.435581 7 1.145927 1.273300 0.0024353578 -1.2645247 0.008880154 6.848269 8 1.146335 1.273767 -0.0020039676 1.2339417 0.007064352 3.849873 9 1.146669 1.274072 -0.0057404326 3.0547026 0.004065864 4.455361 11 1.153276 1.281061 -0.0005511999 0.2641491 0.002823046 5.779573 12 1.153425 1.281206 0.0010326205 0.9014201 0.003495533 3.637306 13 1.153772 1.281614 0.0022712838 1.6078788 0.006600776 3.381017 15 1.155496 1.283505 0.0032995979 1.5696953 0.008659702 5.604658 16 1.155663 1.283690 0.0001709012 1.9738090 0.002614776 6.696140 18 1.160394 1.289357 -0.0001277072 1.6283504 0.007828305 5.571666 19 1.160746 1.289729 0.0029458314 0.6812200 0.008253580 7.596299 20 1.161121 1.290204 -0.0046822325 3.9950009 0.003314563 7.380945 21 1.161477 1.290601 0.0033835876 -3.2267073 0.009176009 4.723439 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 474.888 co2l1 = 1.017 co2l0 = 2.321" [1] "co2l0 = -195.48 co2l1 = 0.217" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "82 out of 235 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "153 out of 1206 1-min values rejected as stack air" [1] "135 out of 1134 Line 1 1-min values rejected as stack air" [1] "18 out of 72 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"