[1] "2025-04-30 00:18:25 MDT" [1] "1505B" "150623" "d174" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150623a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:18:29 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.865, ave o2scale2 = 0.779" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "13 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.865, ave o2scale2 = 0.779" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "13 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:18:30 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:18:30 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:18:46 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:18:48 MDT" [1] "reading in recalculated plot titles" [1] "Removed 13 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1423 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:18:52 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.022 co2off = 481.92 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.37 minutes" [1] "Shortest Cal: 2.05 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 3 5 [3,] 6 7 [4,] 8 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 4 13 0.002973380 0.009232378 0.00679821 1 -88.04547 478.7253 3 5 14 21 0.009927749 0.014796325 0.01444861 NA -78.87719 440.2865 5 2 281 290 0.204774306 0.211033796 0.20859973 3 -88.24095 481.8152 6 4 291 300 0.211729225 0.217989583 0.21555471 3 -67.09746 363.7808 7 3 301 310 0.218685156 0.224944444 0.22390108 3 -79.73505 477.9798 11 4 581 590 0.413448090 0.419707755 0.41727358 2 -67.22869 362.8915 12 2 591 600 0.420402951 0.426662963 0.42422868 2 -88.40527 476.5111 14 2 881 890 0.622130411 0.628393519 0.62595620 3 -88.50454 482.0966 15 4 891 900 0.629089120 0.635351939 0.63291590 3 -67.36091 362.3321 16 5 901 910 0.636047483 0.642310185 0.64126696 NA -79.41297 437.0556 17 3 911 920 0.643005787 0.649265885 0.64822250 3 -79.99855 465.9317 21 4 1181 1190 0.830804456 0.837063715 0.83462951 2 -67.46395 372.7349 22 2 1191 1200 0.837759288 0.844022049 0.84158483 2 -88.61941 484.5663 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.172763 1.303680 -5.735998e-04 2.45635084 0.002207940 7.793705 3 1.172409 1.303284 8.149257e-02 -1.73628131 0.173152773 1.229476 5 1.164810 1.293521 -1.348469e-03 1.18302691 0.004332631 3.625378 6 1.164391 1.293072 1.134345e-03 1.38930831 0.004079284 5.413916 7 1.163881 1.292502 -8.499423e-04 -1.49574457 0.002974736 2.179361 11 1.156279 1.284419 8.530106e-04 -0.12269744 0.006671418 3.940395 12 1.156292 1.284416 -2.671439e-03 2.42120538 0.006633986 7.683262 14 1.151011 1.278962 3.448995e-04 1.81238320 0.002754043 4.885275 15 1.150849 1.278766 8.225580e-04 1.54817883 0.003930470 6.490324 16 1.150730 1.278643 -4.305504e-03 0.05853586 0.003049398 3.229759 17 1.150552 1.278441 -3.538048e-04 2.81135757 0.006449300 4.974247 21 1.146960 1.274715 -2.898587e-05 4.14419942 0.001325588 11.459622 22 1.146896 1.274632 2.507702e-03 2.40375302 0.006629626 6.753851 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 474.54 co2l1 = 1.017 co2l0 = 1.93" [1] "co2l0 = -195.34 co2l1 = 0.217" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "59 out of 920 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "861 out of 1232 1-min values rejected as stack air" [1] "850 out of 934 Line 1 1-min values rejected as stack air" [1] "11 out of 298 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"