[1] "2025-04-30 00:17:52 MDT" [1] "1505B" "150622" "d173" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150622a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86040 63 [1] 86040 [1] 86040 [1] "testing skipping spike filter" [1] 86040 [1] 86040 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:17:56 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.847, ave o2scale2 = 0.762" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "134 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.847, ave o2scale2 = 0.762" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "134 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:17:57 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:17:57 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:18:14 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:18:15 MDT" [1] "reading in recalculated plot titles" [1] "Removed 134 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1299 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:18:20 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.026 co2off = 467.55 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.03 minutes" [1] "Average Cal: 8.29 minutes" [1] "Shortest Cal: 5.02 minutes" [1] "Longest Cal: 9.08 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 173 180 0.1612350 0.1661229 0.1643753 2 -66.18801 373.9806 1.180847 3 2 181 188 0.1682199 0.1745281 0.1723081 2 -87.32771 478.9721 1.181217 5 2 413 421 0.3699780 0.3755695 0.3734735 3 -87.43364 476.8958 1.186983 6 4 422 429 0.3769627 0.3818671 0.3801145 3 -66.30039 356.8900 1.187078 8 3 439 447 0.3909559 0.3972241 0.3962958 3 -78.94589 475.3593 1.187172 11 4 700 709 0.5785348 0.5848072 0.5823667 2 -66.47621 363.0693 1.185692 12 2 710 719 0.5855044 0.5917731 0.5893348 2 -87.62673 481.4959 1.185578 14 2 995 1004 0.7869942 0.7932655 0.7908271 3 -87.84088 480.0412 1.179467 15 4 1005 1014 0.7939624 0.8002310 0.7977930 3 -66.71173 355.2825 1.179210 16 3 1015 1024 0.8009282 0.8071968 0.8061518 3 -79.33305 479.7800 1.179101 18 4 1294 1299 0.9960069 0.9994935 0.9984485 1 -66.90003 360.7282 1.173023 jfcv2 co2slp o2slp co2sd o2sd 2 1.312508 0.0001567132 5.12249467 0.003904208 10.129228 3 1.312970 -0.0009009312 3.77758938 0.006374346 16.482176 5 1.319201 -0.0000513503 -1.91007841 0.001330097 10.999136 6 1.319236 0.0019402642 -1.28806676 0.006083715 5.994014 8 1.319586 -0.0015005967 -2.05687682 0.004046137 3.333705 11 1.318444 0.0019838440 1.53839124 0.008149136 7.170136 12 1.318314 -0.0032203658 2.04184476 0.008204415 6.671203 14 1.311507 -0.0002573305 2.03271684 0.004296676 11.862823 15 1.311241 0.0022141632 0.05865595 0.007700949 5.676305 16 1.311125 0.0006446691 1.15331825 0.002954347 2.355226 18 1.304044 0.0007974293 5.37902917 0.001851590 7.188305 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 473.894 co2l1 = 1.018 co2l0 = 1.7" [1] "co2l0 = -192.15 co2l1 = 0.21" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "23 out of 168 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "145 out of 1158 1-min values rejected as stack air" [1] "143 out of 1099 Line 1 1-min values rejected as stack air" [1] "2 out of 59 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"