[1] "2025-04-30 00:17:33 MDT" [1] "1505B" "150621" "d172" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150621a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 76800 63 [1] 76800 [1] 76800 [1] "testing skipping spike filter" [1] 76800 [1] 76800 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:17:37 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.861, ave o2scale2 = 0.774" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "309 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.861, ave o2scale2 = 0.774" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "307 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:17:37 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:17:37 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:17:44 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:17:46 MDT" [1] "reading in recalculated plot titles" [1] "Removed 307 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 13 row(s) with variable TFCELL" [1] "TEMP: 959 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:17:48 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.016 co2off = 463.5 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.03 minutes" [1] "Average Cal: 6.79 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.05 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 6 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 4 4 238 246 0.3268218 0.3323948 0.3303042 2 -66.90986 348.7847 1.157788 5 2 247 256 0.3330919 0.3393509 0.3369170 2 -88.01162 428.9107 1.157884 7 2 537 545 0.5348830 0.5411436 0.5385596 3 -87.42696 468.9617 1.162309 8 4 546 555 0.5418431 0.5481285 0.5456753 3 -66.27920 364.2395 1.162243 9 3 556 565 0.5488302 0.5550898 0.5540466 3 -78.88670 452.1840 1.162418 14 4 925 930 0.9593009 0.9641697 0.9624307 1 -66.19048 353.3735 1.170559 jfcv2 co2slp o2slp co2sd o2sd 4 1.286982 0.012483398 1.613144 0.027547608 11.706526 5 1.286996 0.013122637 8.995539 0.032491929 26.561593 7 1.291964 0.005131547 5.628757 0.015670019 17.212902 8 1.291948 0.003629985 3.958353 0.010308833 10.230946 9 1.292137 0.002748207 4.117209 0.007552010 5.526305 14 1.300967 0.002530784 1.534744 0.006433631 3.809161 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 473.838 co2l1 = 1.018 co2l0 = 3.258" [1] "co2l0 = -213.78 co2l1 = 0.272" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "45 out of 115 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "70 out of 842 1-min values rejected as stack air" [1] "70 out of 729 Line 1 1-min values rejected as stack air" [1] "0 out of 113 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"