[1] "2025-04-30 00:14:23 MDT" [1] "1505" "150617" "d168" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150617a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 22040 63 [1] 22040 [1] 22040 [1] "testing skipping spike filter" [1] 22040 [1] 22040 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:14:24 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.851, ave o2scale2 = 0.762" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "1 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.851, ave o2scale2 = 0.762" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "1 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:14:24 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:14:24 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:14:29 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:14:30 MDT" [1] "reading in recalculated plot titles" [1] "Removed 2 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 365 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:14:31 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.017 co2off = 472.5 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.03 minutes" [1] "Shortest Cal: 9.02 minutes" [1] "Longest Cal: 9.04 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 89 98 0.06300174 0.06926858 0.06683067 2 -66.84059 363.0584 3 2 99 108 0.06996412 0.07624103 0.07379803 2 -88.03323 480.9068 4 5 109 118 0.07694502 0.08320868 0.08216357 NA -78.90653 439.0761 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.171958 1.309345 0.0023014267 0.5734917 0.0060109647 3.041108 3 1.172453 1.309898 0.0017464573 1.5266044 0.0056243799 4.887329 4 1.173098 1.310618 -0.0004361371 1.5567545 0.0003093592 2.084286 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 474.035 co2l1 = 1.015 co2l0 = 0" [1] "co2l0 = -194.75 co2l1 = 0.216" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "73 out of 230 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "157 out of 313 1-min values rejected as stack air" [1] "157 out of 313 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "making html"