[1] "2025-04-30 00:13:13 MDT" [1] "1505" "150615" "d166" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150615a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:13:17 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.869, ave o2scale2 = 0.778" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "6 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.869, ave o2scale2 = 0.778" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "8 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:13:17 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:13:17 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:13:35 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:13:36 MDT" [1] "reading in recalculated plot titles" [1] "Removed 8 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1428 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:13:46 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.015 co2off = 478.34 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.85 minutes" [1] "Shortest Cal: 7.02 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 262 271 0.1839748 0.1902382 0.1878015 3 -88.14298 480.4973 1.152831 3 4 272 281 0.1909334 0.1971968 0.1947600 3 -66.93891 362.7780 1.152607 4 5 282 291 0.1978922 0.2041551 0.2031100 NA -78.95369 435.9520 1.152654 5 3 292 301 0.2048504 0.2111134 0.2100683 3 -79.59178 472.4705 1.152693 8 4 562 571 0.3928150 0.3990832 0.3966472 2 -66.97524 364.5904 1.151891 9 2 572 581 0.3997784 0.4060472 0.4036125 2 -88.19933 478.9369 1.151847 12 2 858 867 0.6016731 0.6079329 0.6054984 3 -88.23700 473.6272 1.151413 13 4 868 875 0.6086285 0.6135010 0.6117596 3 -67.01632 358.1123 1.151356 14 3 876 885 0.6155872 0.6218502 0.6208071 3 -79.68182 473.4325 1.151667 16 4 1156 1165 0.8104025 0.8166659 0.8142313 2 -67.04447 365.7145 1.149712 17 2 1166 1175 0.8173620 0.8236244 0.8211903 2 -88.25220 474.9298 1.149721 18 5 1176 1185 0.8243199 0.8305798 0.8295365 NA -79.10409 442.8332 1.149446 jfcv2 co2slp o2slp co2sd o2sd 2 1.287194 0.0012053392 1.2061208 0.0035142805 5.353154 3 1.286954 0.0019120374 1.6703761 0.0064731535 5.288315 4 1.286978 0.0021215525 -0.2317830 0.0015026019 3.852111 5 1.287008 0.0028029952 -0.5977107 0.0072551552 1.278140 8 1.286144 0.0013913291 1.1809694 0.0037540807 3.932143 9 1.286103 -0.0001950188 1.2579046 0.0019335357 4.609082 12 1.285578 0.0010250095 1.9512027 0.0060755107 6.139015 13 1.285527 0.0037934737 0.7710019 0.0088294090 4.076596 14 1.285887 0.0003877234 2.2152924 0.0028542413 3.640202 16 1.283712 0.0003048559 -0.7966934 0.0021492835 4.243846 17 1.283712 0.0011321737 1.6835628 0.0043174467 4.312869 18 1.283390 0.0011856228 3.5995638 0.0008396893 4.867357 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 474.125 co2l1 = 1.014 co2l0 = 2.68" [1] "co2l0 = -196.09 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "188 out of 910 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "722 out of 1259 1-min values rejected as stack air" [1] "665 out of 1046 Line 1 1-min values rejected as stack air" [1] "57 out of 213 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"