[1] "2025-04-30 00:11:58 MDT" [1] "1505" "150612" "d163" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150612a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85680 63 [1] 85680 [1] 85680 [1] "testing skipping spike filter" [1] 85680 [1] 85680 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:12:02 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.86, ave o2scale2 = 0.77" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "18 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.86, ave o2scale2 = 0.77" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "18 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:12:03 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:12:03 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:12:09 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:12:11 MDT" [1] "reading in recalculated plot titles" [1] "Removed 18 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1408 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:12:13 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.016 co2off = 484.19 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.05 minutes" [1] "Average Cal: 9.05 minutes" [1] "Shortest Cal: 9.02 minutes" [1] "Longest Cal: 9.12 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 7 [4,] 8 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 183 192 0.1308611 0.1371238 0.1346881 2 -66.82135 365.1796 1.164477 3 2 193 202 0.1378194 0.1440860 0.1416511 2 -88.04265 480.9846 1.164413 4 5 203 212 0.1447814 0.1510446 0.1500015 NA -78.89456 436.9592 1.164372 6 2 483 492 0.3396540 0.3459168 0.3434818 3 -88.02510 479.9206 1.165563 7 4 493 502 0.3466123 0.3528753 0.3504407 3 -66.81537 360.3869 1.165427 8 3 503 512 0.3535707 0.3598360 0.3587912 3 -79.48840 465.1705 1.165495 12 2 779 788 0.5585757 0.5648722 0.5624252 1 -88.03719 476.9454 1.161534 14 2 1066 1075 0.7602176 0.7665125 0.7640667 3 -88.02801 480.6670 1.161163 15 4 1076 1085 0.7672115 0.7735093 0.7710563 3 -66.83345 363.9754 1.161062 16 5 1086 1095 0.7742135 0.7805489 0.7794906 NA -78.87350 444.4989 1.161019 17 3 1096 1105 0.7812481 0.7875347 0.7864869 3 -79.50090 472.8905 1.161073 19 4 1364 1373 0.9689378 0.9752331 0.9727858 2 -66.86093 362.9362 1.160240 20 2 1374 1383 0.9759317 0.9822201 0.9797746 2 -88.07668 478.4629 1.160326 jfcv2 co2slp o2slp co2sd o2sd 2 1.297285 0.0029653520 1.5649608 0.0075948568 6.263420 3 1.297204 0.0001664484 2.3333805 0.0011692381 6.273721 4 1.297161 -0.0048687112 -4.9265401 0.0034471456 6.472532 6 1.298581 0.0012813094 1.0466354 0.0044443405 3.873461 7 1.298463 0.0008475894 0.9466351 0.0083494037 3.527806 8 1.298522 0.0001579934 -3.4943029 0.0046682267 4.642112 12 1.298067 -0.0017791487 2.5239161 0.0073200892 12.964064 14 1.297139 -0.0013682108 0.3731562 0.0039530500 3.456650 15 1.297038 0.0013378652 0.7658877 0.0062113762 5.036372 16 1.297012 -0.0002453988 -0.8999606 0.0001767767 1.207720 17 1.297071 0.0013633383 3.0309435 0.0041160533 4.006037 19 1.296295 0.0029483611 0.4901265 0.0077307103 2.017053 20 1.296406 -0.0023863053 1.8400001 0.0072467232 5.768465 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 473.98 co2l1 = 1.014 co2l0 = 1.697" [1] "co2l0 = -195.03 co2l1 = 0.217" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "71 out of 215 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "144 out of 1222 1-min values rejected as stack air" [1] "143 out of 1164 Line 1 1-min values rejected as stack air" [1] "1 out of 58 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"