[1] "2025-04-30 00:10:55 MDT" [1] "1505" "150610" "d161" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150610a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:10:59 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.874, ave o2scale2 = 0.786" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "76 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.874, ave o2scale2 = 0.786" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "78 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:10:59 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:10:59 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:11:16 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:11:18 MDT" [1] "reading in recalculated plot titles" [1] "Removed 79 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1357 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:11:22 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.015 co2off = 470.26 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.66 minutes" [1] "Shortest Cal: 6.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Removed 1 calibration row(s) with high SL" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 60 69 0.04310631 0.04936921 0.04693513 2 -67.03290 365.2198 3 2 70 79 0.05006481 0.05632786 0.05389332 2 -88.25477 476.3473 5 2 360 369 0.25190972 0.25817286 0.25573562 3 -88.30048 477.8292 6 4 370 379 0.25886823 0.26513116 0.26269382 3 -67.07497 360.2295 8 3 388 397 0.27278487 0.27904401 0.27800085 3 -79.74708 469.5495 10 4 653 662 0.46077685 0.46704303 0.46460861 2 -67.05906 366.0861 11 2 663 672 0.46774028 0.47400113 0.47156663 2 -88.28456 475.5693 13 2 941 949 0.67029786 0.67586574 0.67377849 3 -88.30565 479.5233 14 4 950 959 0.67656134 0.68282523 0.68038955 3 -67.08895 364.6232 15 3 960 969 0.68352104 0.68978458 0.68874128 3 -79.76742 470.4148 17 4 1191 1200 0.87836690 0.88462616 0.88219189 2 -67.05588 364.6329 18 2 1201 1210 0.88532214 0.89158134 0.88914736 2 -88.28772 478.5820 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.147120 1.275906 3.394724e-03 1.05148880 0.009057600 5.073004 3 1.147076 1.275863 1.351018e-03 1.58199621 0.004219420 4.354198 5 1.145117 1.273602 -2.457915e-05 -0.04053819 0.002328717 8.387421 6 1.144853 1.273268 2.435905e-03 -0.38085087 0.006968760 6.562918 8 1.145073 1.273515 1.841143e-03 1.43160464 0.005119744 2.220251 10 1.142984 1.271342 7.933364e-04 1.09234922 0.003914687 3.294865 11 1.142889 1.271230 -1.552538e-03 0.97819487 0.004549333 2.555560 13 1.141222 1.269587 -2.891386e-03 1.06939751 0.006801392 3.880401 14 1.141181 1.269461 1.602284e-03 1.03428796 0.006959525 2.799022 15 1.141157 1.269439 -1.607681e-03 -0.34530169 0.004270663 1.221572 17 1.144967 1.273650 2.424260e-03 0.68568757 0.006399327 2.933833 18 1.145220 1.273936 -6.402550e-05 -0.09664742 0.004008779 3.411246 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 474.163 co2l1 = 1.014 co2l0 = 1.977" [1] "co2l0 = -197.83 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "76 out of 251 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "175 out of 1171 1-min values rejected as stack air" [1] "175 out of 1171 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"