[1] "2025-04-30 00:09:52 MDT" [1] "1505" "150608" "d159" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150608a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85920 63 [1] 85920 [1] 85920 [1] "testing skipping spike filter" [1] 85920 [1] 85920 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:09:56 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.861, ave o2scale2 = 0.773" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "15 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.861, ave o2scale2 = 0.773" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "16 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:09:57 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:09:57 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:10:14 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:10:16 MDT" [1] "reading in recalculated plot titles" [1] "Removed 16 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1415 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:10:19 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.014 co2off = 470.01 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.74 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 237 246 0.1649933 0.1712592 0.1688214 3 -87.92061 478.1239 1.165505 3 4 247 256 0.1719546 0.1782176 0.1757811 3 -66.69287 366.5055 1.165639 4 3 257 266 0.1789130 0.1851758 0.1841325 3 -79.35993 462.1465 1.165935 6 4 537 546 0.3737558 0.3800185 0.3775830 2 -66.70136 362.8828 1.165421 7 2 547 556 0.3807141 0.3869737 0.3845393 2 -87.91409 477.3126 1.165640 8 5 557 566 0.3876690 0.3939291 0.3928853 NA -78.79197 442.9951 1.165652 10 2 825 833 0.5816401 0.5872037 0.5851170 3 -87.99534 474.2226 1.163064 11 4 834 842 0.5878990 0.5934631 0.5913769 3 -66.77486 361.9611 1.162908 12 3 843 851 0.5941586 0.5997265 0.5990311 3 -79.44776 473.7978 1.162894 14 4 1121 1130 0.7903872 0.7966505 0.7942152 2 -66.85539 362.0051 1.156905 15 2 1131 1139 0.7973459 0.8036053 0.8012207 2 -88.08869 473.6901 1.156820 jfcv2 co2slp o2slp co2sd o2sd 2 1.297981 0.0008438241 2.0780233 0.002596948 6.919037 3 1.298128 0.0029262381 0.3900365 0.007728039 3.077970 4 1.298403 0.0007625104 -6.4415650 0.002984042 9.513643 6 1.297946 -0.0002930556 0.7011022 0.004197117 4.293038 7 1.298178 0.0006633031 1.2646479 0.002273424 3.579135 8 1.298186 -0.0018080552 1.9242138 0.001281631 2.753006 10 1.295035 0.0031935524 2.0913180 0.007059167 5.052864 11 1.294996 0.0045896159 2.2708839 0.010597004 7.298093 12 1.294687 0.0043919666 -1.4465319 0.009695120 1.452886 14 1.287578 0.0011493952 2.8877137 0.003642315 7.583921 15 1.287397 -0.0005097256 1.8356377 0.003431353 6.098935 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 473.855 co2l1 = 1.014 co2l0 = 2.405" [1] "co2l0 = -198.01 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "52 out of 130 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "78 out of 1262 1-min values rejected as stack air" [1] "78 out of 1262 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"