[1] "2025-04-30 00:09:22 MDT" [1] "1505" "150607" "d158" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150607a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:09:26 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.857, ave o2scale2 = 0.77" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "74 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.857, ave o2scale2 = 0.77" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "76 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:09:26 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:09:26 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:09:43 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:09:45 MDT" [1] "reading in recalculated plot titles" [1] "Removed 76 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1360 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:09:47 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.015 co2off = 466.67 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.38 minutes" [1] "Shortest Cal: 3.01 minutes" [1] "Longest Cal: 9.09 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 166 175 0.1212083 0.1274678 0.1250339 2 -66.65868 362.7209 1.157804 3 2 176 179 0.1281632 0.1302535 0.1299039 2 -87.89347 472.7763 1.157823 6 2 407 416 0.3299709 0.3362338 0.3337980 3 -87.83173 476.8689 1.165405 7 4 417 426 0.3369292 0.3431921 0.3407574 3 -66.61296 364.0468 1.165734 8 3 427 436 0.3438876 0.3501520 0.3491075 3 -79.27327 474.4923 1.166433 10 4 698 707 0.5387088 0.5450221 0.5425687 2 -66.54959 366.8903 1.171653 11 2 708 717 0.5457182 0.5519785 0.5495442 2 -87.76975 476.6255 1.171612 13 2 998 1007 0.7474911 0.7537542 0.7513188 3 -87.77427 475.1005 1.173219 14 4 1008 1017 0.7544499 0.7607128 0.7582783 3 -66.56208 362.5675 1.173229 15 5 1018 1027 0.7614082 0.7676732 0.7666284 NA -78.64022 439.3907 1.173210 16 3 1028 1037 0.7683704 0.7746331 0.7735883 3 -79.24862 473.9000 1.173376 18 4 1298 1307 0.9562429 0.9625058 0.9600710 2 -66.61602 358.1418 1.171219 19 2 1308 1317 0.9632012 0.9694604 0.9670262 2 -87.83697 478.8561 1.170899 jfcv2 co2slp o2slp co2sd o2sd 2 1.287979 0.0015089721 1.28833074 0.004539317 3.8126967 3 1.287995 -0.0037872517 1.88208049 0.002695845 1.3397041 6 1.297526 0.0007146264 1.78219588 0.003720532 9.2562532 7 1.297929 0.0029186056 2.02194910 0.008843817 7.7726935 8 1.298749 0.0020739362 2.10285293 0.006138265 2.8693671 10 1.304923 0.0006154301 1.27357801 0.005899171 3.6299638 11 1.304898 -0.0002347560 2.39494209 0.002022474 6.6334909 13 1.306919 0.0000954228 1.74080836 0.002527251 5.0399850 14 1.306943 0.0038479206 1.01956259 0.010510876 3.2535817 15 1.306937 -0.0040446362 2.02894613 0.002872621 2.9607878 16 1.307139 -0.0009545881 -0.04665302 0.003821117 0.8776173 18 1.304715 0.0027971059 0.90358173 0.007556096 6.2953784 19 1.304312 -0.0044915981 1.92458972 0.012187065 4.8729046 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 473.702 co2l1 = 1.014 co2l0 = 1.902" [1] "co2l0 = -196.75 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "42 out of 260 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "218 out of 1177 1-min values rejected as stack air" [1] "218 out of 1177 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"