[1] "2025-04-30 00:08:28 MDT" [1] "1505" "150605" "d156" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150605a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:08:32 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.845, ave o2scale2 = 0.759" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "11 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.845, ave o2scale2 = 0.759" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "11 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:08:32 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:08:32 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:08:48 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:08:50 MDT" [1] "reading in recalculated plot titles" [1] "Removed 12 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 1 row(s) with LiCO2A spikes in them" [1] "TEMP: 1423 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:08:54 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.015 co2off = 473.46 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [5,] 12 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 104 113 0.07306010 0.07931988 0.07688514 3 -87.32088 475.1761 3 4 114 123 0.08001513 0.08627431 0.08384029 3 -66.10239 364.3951 4 3 124 133 0.08697002 0.09323267 0.09218929 3 -78.76621 472.5720 7 4 395 404 0.28178944 0.28804957 0.28561509 2 -66.20243 367.0861 8 2 405 414 0.28874491 0.29500802 0.29257283 2 -87.43688 480.4582 9 5 415 424 0.29570336 0.30196617 0.30092295 NA -78.19284 439.2328 12 2 694 703 0.49057509 0.49683681 0.49440150 3 -87.40164 479.1618 13 4 704 713 0.49753241 0.50379514 0.50136057 3 -66.19073 361.9432 14 3 714 723 0.50449074 0.51075347 0.50971010 3 -78.85078 470.1763 16 4 993 1002 0.69940573 0.70566889 0.70323414 2 -66.13986 365.7368 17 2 1003 1012 0.70636432 0.71262743 0.71019297 2 -87.35666 478.0143 19 2 1292 1301 0.90821288 0.91447569 0.91204030 3 -87.38980 477.4689 20 4 1302 1311 0.91517130 0.92143403 0.91899985 3 -66.16569 361.7396 21 5 1312 1321 0.92212963 0.92839546 0.92734982 NA -78.19341 441.6476 22 3 1322 1331 0.92909230 0.93535515 0.93431100 3 -78.83914 470.8739 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.182526 1.317688 -6.893621e-04 1.79857475 0.002434178 4.7690867 3 1.182233 1.317344 2.144409e-03 3.49231503 0.009236099 8.7477644 4 1.182163 1.317231 1.089932e-03 2.16113609 0.004145369 3.4580700 7 1.179729 1.314417 -4.062994e-04 0.58449446 0.001818935 4.6436606 8 1.180022 1.314736 3.730862e-04 2.77188024 0.002075161 7.4614639 9 1.180146 1.314884 -4.805892e-03 -2.94636599 0.003402951 5.8969933 12 1.183555 1.318654 -1.153478e-03 2.15710344 0.003511580 5.5665951 13 1.183462 1.318565 2.889588e-03 0.08225027 0.007518040 2.1167761 14 1.183684 1.318802 1.414579e-03 2.12667735 0.004578312 3.3791107 16 1.185121 1.320470 3.013762e-03 2.18598253 0.008045473 6.5745776 17 1.185212 1.320565 9.243507e-04 0.46383580 0.005094421 6.3916558 19 1.185523 1.320961 -3.030644e-05 -0.18857984 0.002020663 4.7582541 20 1.185412 1.320828 5.780270e-03 2.12489451 0.015559506 5.5559783 21 1.185486 1.320893 -2.174363e-03 -0.09396711 0.001546796 0.4346853 22 1.185408 1.320801 -9.372343e-04 -2.14373703 0.004269356 3.0358249 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 473.259 co2l1 = 1.014 co2l0 = 2.413" [1] "co2l0 = -196.75 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "85 out of 462 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "377 out of 1212 1-min values rejected as stack air" [1] "329 out of 1068 Line 1 1-min values rejected as stack air" [1] "48 out of 144 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"