[1] "2025-04-30 00:08:09 MDT" [1] "1505" "150604" "d155" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150604a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 74432 63 [1] 74432 [1] 74432 [1] "testing skipping spike filter" [1] 74432 [1] 74432 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:08:13 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.846, ave o2scale2 = 0.759" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "83 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.846, ave o2scale2 = 0.759" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "83 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:08:13 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:08:13 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:08:20 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:08:21 MDT" [1] "reading in recalculated plot titles" [1] "Removed 83 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 8 row(s) with variable TFCELL" [1] "TEMP: 1148 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:08:23 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.017 co2off = 473.99 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.89 minutes" [1] "Shortest Cal: 8.02 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 7 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 244 253 0.1700883 0.1763518 0.1739155 3 -88.34064 479.3534 1.180363 3 4 254 263 0.1770473 0.1833065 0.1808722 3 -67.18009 364.8144 1.180189 4 3 264 273 0.1840023 0.1902658 0.1892225 3 -79.83859 473.0521 1.180277 6 4 544 553 0.3787643 0.3850277 0.3825914 2 -67.16063 364.6630 1.181728 7 2 554 563 0.3857233 0.3919861 0.3895496 2 -88.32723 479.2547 1.181929 11 4 954 963 0.8643009 0.8705645 0.8681294 2 -65.98498 361.6526 1.186681 12 2 964 973 0.8712598 0.8775224 0.8750872 2 -87.19888 483.7420 1.186877 jfcv2 co2slp o2slp co2sd o2sd 2 1.312983 -1.074948e-03 2.6968335 0.004677519 7.031875 3 1.312811 2.816981e-03 1.8356191 0.010856768 4.860859 4 1.312931 2.268856e-04 1.2858215 0.002262845 1.885883 6 1.314809 1.835201e-03 0.4620602 0.005440572 3.159233 7 1.315040 -1.200143e-03 1.6121409 0.003798487 5.159676 11 1.323141 9.181510e-04 -1.2523624 0.004190464 4.473844 12 1.323237 2.402801e-05 3.3526223 0.003752445 8.940237 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 473.991 co2l1 = 1.015 co2l0 = 0.913" [1] "co2l0 = -194.99 co2l1 = 0.216" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "72 out of 415 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "343 out of 1027 1-min values rejected as stack air" [1] "343 out of 1027 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"