[1] "2025-04-30 00:07:38 MDT" [1] "1505" "150603" "d154" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150603a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:07:42 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.855, ave o2scale2 = 0.77" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "30 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.855, ave o2scale2 = 0.77" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "30 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:07:43 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:07:43 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:08:00 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:08:01 MDT" [1] "reading in recalculated plot titles" [1] "Removed 30 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1405 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:08:04 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.017 co2off = 469.23 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 174 183 0.1266170 0.1328774 0.1304432 2 -67.40477 367.9503 1.164563 3 2 184 189 0.1335729 0.1398367 0.1380969 2 -88.57248 475.4424 1.164799 5 2 451 460 0.3353044 0.3415637 0.3391298 3 -88.55395 480.4874 1.166628 6 4 461 470 0.3422593 0.3485186 0.3460847 3 -67.36734 368.5216 1.166700 7 5 471 480 0.3492141 0.3554739 0.3544306 NA -79.39991 439.3899 1.166925 8 3 481 490 0.3561693 0.3624293 0.3613856 3 -80.00973 471.0959 1.166903 10 4 750 759 0.5439885 0.5502524 0.5478178 2 -67.30325 365.0567 1.169924 11 2 760 769 0.5509479 0.5572073 0.5547732 2 -88.47824 479.6040 1.170160 13 2 1050 1059 0.7526694 0.7589293 0.7564950 3 -88.44319 484.2312 1.172952 14 4 1060 1069 0.7596247 0.7658843 0.7634500 3 -67.27867 363.7319 1.173004 15 3 1070 1079 0.7665795 0.7728391 0.7717959 3 -79.91916 473.5917 1.173307 17 4 1350 1359 0.9613727 0.9676355 0.9651999 2 -67.23259 363.2824 1.176982 18 2 1360 1369 0.9683310 0.9745903 0.9721560 2 -88.40224 478.2884 1.177270 19 5 1370 1379 0.9752859 0.9815452 0.9805019 NA -79.25716 440.1157 1.177272 jfcv2 co2slp o2slp co2sd o2sd 2 1.293794 4.890383e-03 0.89638923 1.235496e-02 3.0772448 3 1.294045 9.211280e-04 3.80869920 3.383621e-03 12.2574957 5 1.296185 1.709331e-04 1.64237602 1.697145e-03 4.3876821 6 1.296271 1.529097e-03 0.41173948 5.529345e-03 5.1600011 7 1.296512 6.241158e-05 1.06987702 4.419417e-05 1.4013370 8 1.296474 2.715213e-03 0.09845877 6.821377e-03 0.9484892 10 1.300142 2.078422e-03 0.92050696 7.143225e-03 2.9445301 11 1.300424 -1.086880e-03 1.33353898 3.429201e-03 3.6986484 13 1.303988 4.547355e-04 1.21138031 3.298742e-03 4.6616354 14 1.304047 1.315126e-03 1.10982350 5.051935e-03 3.6213092 15 1.304331 1.750486e-03 1.13401936 5.742717e-03 2.6149791 17 1.308861 8.565567e-04 1.75513483 4.050325e-03 5.9163262 18 1.309187 5.385596e-04 1.04432061 1.396918e-03 3.8839802 19 1.309217 -3.931930e-03 0.59784373 2.784233e-03 2.6203833 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 474.587 co2l1 = 1.016 co2l0 = 2.237" [1] "co2l0 = -198.05 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "80 out of 305 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "225 out of 1217 1-min values rejected as stack air" [1] "225 out of 1217 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"