[1] "2025-04-30 00:07:08 MDT" [1] "1505" "150602" "d153" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150602a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:07:12 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.857, ave o2scale2 = 0.772" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "7 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.857, ave o2scale2 = 0.772" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "9 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:07:12 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:07:12 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:07:29 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:07:31 MDT" [1] "reading in recalculated plot titles" [1] "Removed 9 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1427 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:07:33 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.016 co2off = 470.84 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.88 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 116 125 0.08347161 0.08973197 0.08729697 3 -88.51244 481.6310 3 4 126 135 0.09042729 0.09668683 0.09425271 3 -67.32918 365.6876 5 3 145 154 0.10433802 0.11059835 0.10955477 3 -79.97665 476.4214 7 4 415 424 0.29214352 0.29840278 0.29596862 2 -67.31012 364.8113 8 2 425 434 0.29909838 0.30535767 0.30292361 2 -88.49356 475.7731 10 2 715 724 0.50083218 0.50709499 0.50465811 3 -88.54637 471.0999 11 4 725 734 0.50779051 0.51404983 0.51161567 3 -67.36747 365.5075 12 3 735 744 0.51474546 0.52100503 0.51996194 3 -80.00869 470.2291 14 4 1015 1024 0.70953012 0.71578935 0.71335533 2 -67.37402 364.3705 15 2 1025 1034 0.71648498 0.72274421 0.72031019 2 -88.56204 479.2409 16 5 1035 1044 0.72343981 0.72970278 0.72865961 NA -79.41856 436.6851 18 2 1314 1321 0.91962500 0.92449306 0.92275428 3 -88.60314 479.2650 19 4 1322 1331 0.92518869 0.93144792 0.92901385 3 -67.41537 365.2850 20 3 1332 1341 0.93214355 0.93840278 0.93735942 3 -80.05754 469.1135 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.170129 1.299745 0.0007665173 1.3194311 0.002270738 4.757060 3 1.170226 1.299845 0.0011375990 1.9320725 0.008136149 5.370943 5 1.170213 1.299850 0.0011551485 3.2103070 0.003715156 4.477884 7 1.169320 1.298874 0.0041770516 2.0850247 0.010466624 6.303841 8 1.169280 1.298830 -0.0028854379 1.0440275 0.007577943 5.790428 10 1.165853 1.295023 -0.0019817173 1.0927995 0.005269462 12.682365 11 1.165616 1.294776 0.0006448704 1.2295752 0.007887108 4.075230 12 1.165555 1.294719 0.0022585010 -2.8901180 0.005666710 3.889027 14 1.163651 1.292707 0.0005810769 0.8417558 0.004081856 4.412392 15 1.163710 1.292768 -0.0011314883 1.6653665 0.005083009 4.567036 16 1.163538 1.292574 -0.0033696647 1.1471564 0.002386485 2.789049 18 1.163811 1.292938 0.0015994189 1.9251336 0.003182328 4.138743 19 1.163773 1.292898 0.0035404917 1.2943241 0.009770836 5.468681 20 1.163917 1.293054 0.0022042523 1.2745986 0.009749081 1.648493 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 474.595 co2l1 = 1.016 co2l0 = 2.551" [1] "co2l0 = -198.01 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "97 out of 698 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "601 out of 1223 1-min values rejected as stack air" [1] "601 out of 1223 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"