[1] "2025-04-30 00:06:36 MDT" [1] "1505" "150601" "d152" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150601a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:06:40 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.857, ave o2scale2 = 0.771" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "29 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.857, ave o2scale2 = 0.771" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "31 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:06:41 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:06:41 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:06:58 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:07:00 MDT" [1] "reading in recalculated plot titles" [1] "Removed 31 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1405 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:07:03 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.016 co2off = 478.53 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.78 minutes" [1] "Shortest Cal: 7.02 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 6 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 54 61 0.04002335 0.04628255 0.04431233 2 -67.48706 359.9516 3 2 62 71 0.04697804 0.05323843 0.05080380 2 -88.66702 478.5232 5 2 337 346 0.24874355 0.25500347 0.25256906 2 -88.58343 476.3974 6 4 347 356 0.25569876 0.26195804 0.25952378 2 -67.39141 363.1572 9 4 628 637 0.45743521 0.46369505 0.46126088 2 -67.36130 363.4307 10 2 638 646 0.46439042 0.46995833 0.46787116 2 -88.53442 478.0171 11 5 647 656 0.47134928 0.47760880 0.47656572 NA -79.41150 439.3751 13 2 926 935 0.66613539 0.67239815 0.66996276 3 -88.49823 475.6419 14 4 936 945 0.67309375 0.67935651 0.67692214 3 -67.32446 365.2878 15 3 946 955 0.68005211 0.68631481 0.68527182 3 -79.98168 477.9155 17 4 1226 1235 0.87483851 0.88109841 0.87866380 2 -67.31204 368.4656 18 2 1236 1245 0.88179398 0.88805313 0.88561888 2 -88.49765 479.9031 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.160967 1.289791 0.0020240977 2.1634993 0.005495737 5.886088 3 1.160765 1.289581 -0.0008749900 1.0245865 0.003434455 5.220552 5 1.166112 1.295329 0.0016277427 0.6625515 0.004082907 4.593152 6 1.166280 1.295502 0.0027345709 0.4120494 0.007704861 3.299372 9 1.167914 1.297363 -0.0006023531 1.0311745 0.006539495 2.928545 10 1.167930 1.297290 0.0009397286 1.4838171 0.003564092 5.008784 11 1.168003 1.297453 -0.0027463382 3.0565802 0.001944544 4.215615 13 1.169763 1.299322 -0.0012928047 -0.1239798 0.003606286 4.704254 14 1.169794 1.299354 0.0003903304 0.4515417 0.007763664 3.738558 15 1.169819 1.299397 -0.0004841810 4.4133473 0.002828711 6.524542 17 1.170343 1.299961 0.0007078287 0.1746239 0.007197310 7.983036 18 1.170394 1.300039 -0.0003454390 0.6472612 0.001831927 8.896911 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 474.618 co2l1 = 1.016 co2l0 = 1.447" [1] "co2l0 = -196.96 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "125 out of 544 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "419 out of 1229 1-min values rejected as stack air" [1] "419 out of 1229 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"