[1] "2025-04-30 00:06:08 MDT" [1] "1505" "150531" "d151" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150531a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:06:12 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.86, ave o2scale2 = 0.774" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "175 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.86, ave o2scale2 = 0.774" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "176 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:06:12 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:06:12 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:06:28 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:06:29 MDT" [1] "reading in recalculated plot titles" [1] "Removed 176 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1260 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:06:32 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.017 co2off = 469.34 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 7.75 minutes" [1] "Shortest Cal: 2 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 4 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 6 7 [4,] 8 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 4 11 0.003576042 0.009835648 0.007633174 2 -67.39845 364.6030 3 3 12 21 0.010531250 0.016791435 0.015747562 2 -80.04116 471.8237 5 4 286 295 0.205318287 0.211581192 0.209145103 2 -67.36007 368.0789 6 2 296 305 0.212276620 0.218539988 0.216103067 2 -88.54650 478.5016 7 5 306 315 0.219235301 0.225498524 0.224452705 NA -79.45866 439.5391 9 2 567 576 0.414002344 0.420265365 0.417828863 2 -88.58996 479.0720 10 4 577 586 0.420960735 0.427219965 0.424785985 2 -67.41059 367.7735 13 4 821 830 0.622680150 0.628938773 0.626504897 2 -67.51694 365.2477 14 2 831 840 0.629634346 0.635893519 0.633459534 2 -88.69941 476.4595 16 2 1085 1092 0.831341493 0.836209635 0.834471238 2 -88.78269 474.8980 17 4 1093 1099 0.840386545 0.844559028 0.843168050 2 -67.60296 369.3410 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.168785 1.298047 -0.0006878897 4.1589506 0.003430845 9.905206 3 1.169085 1.298406 0.0035556036 -0.6951648 0.009727076 1.172487 5 1.167331 1.296428 0.0005735407 1.6588543 0.004785399 5.351355 6 1.167172 1.296300 -0.0006429025 1.0372214 0.002831385 5.215792 7 1.167014 1.296169 -0.0044126787 3.1469881 0.003137786 4.107506 9 1.164890 1.293916 -0.0008819236 0.9941959 0.004697066 2.581744 10 1.164473 1.293490 0.0031095251 2.1899154 0.008685151 6.142258 13 1.160125 1.288793 0.0011887316 1.2710314 0.003883775 3.260551 14 1.159937 1.288614 0.0005513076 2.5843106 0.003682275 6.491320 16 1.155718 1.284167 0.0017226501 4.3552017 0.003917309 8.649645 17 1.155917 1.284484 0.0020344801 1.9620794 0.003531831 4.504708 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 474.746 co2l1 = 1.016 co2l0 = 0" [1] "co2l0 = -200.33 co2l1 = 0.229" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "112 out of 505 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "393 out of 1078 1-min values rejected as stack air" [1] "393 out of 1078 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"