[1] "2025-04-30 00:05:46 MDT" [1] "1505" "150530" "d150" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150530a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85615 63 [1] 85615 [1] 85615 [1] "testing skipping spike filter" [1] 85615 [1] 85615 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:05:50 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.853, ave o2scale2 = 0.768" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "140 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.853, ave o2scale2 = 0.768" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "140 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:05:50 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:05:50 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:05:59 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:06:01 MDT" [1] "reading in recalculated plot titles" [1] "Removed 140 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1284 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:06:03 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.017 co2off = 478.34 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 7.95 minutes" [1] "Shortest Cal: 3 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 11 [5,] 13 14 [6,] 15 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 139 146 0.1085556 0.1148149 0.1130761 2 -67.29047 364.9884 1.171527 3 2 147 156 0.1155105 0.1217698 0.1193358 2 -88.45164 474.2485 1.171753 7 2 432 440 0.3172477 0.3235069 0.3214206 3 -88.45591 480.4296 1.174337 8 4 441 450 0.3242026 0.3304655 0.3280305 3 -67.27464 363.6364 1.174244 9 3 451 460 0.3311609 0.3374241 0.3363810 3 -79.92795 468.0017 1.174264 11 4 721 730 0.5259523 0.5322118 0.5297773 2 -67.28295 362.5758 1.174600 12 2 731 740 0.5329073 0.5391701 0.5367332 2 -88.46401 477.1953 1.174894 13 5 741 750 0.5398658 0.5461250 0.5450817 NA -79.32316 440.8865 1.175207 15 3 775 779 0.5820297 0.5855069 0.5862025 3 -79.91108 469.1536 1.173141 16 2 780 786 0.5862025 0.5924620 0.5910710 3 -88.44925 486.7975 1.173771 17 4 787 796 0.5931574 0.5994168 0.5969825 3 -67.28375 368.2948 1.174017 18 5 797 806 0.6001126 0.6063717 0.6053286 NA -79.98800 435.0037 1.174171 20 4 1056 1061 0.7879438 0.7935073 0.7917688 2 -67.34692 366.9618 1.170419 21 2 1062 1065 0.7948983 0.7969850 0.7966373 2 -88.52228 469.0037 1.170450 25 2 1280 1284 0.9966205 0.9994028 0.9987072 1 -88.55858 468.0991 1.169092 jfcv2 co2slp o2slp co2sd o2sd 2 1.300913 0.0014318090 -0.01881925 0.0030178505 1.2989883 3 1.301138 0.0022944160 1.84939823 0.0069410585 4.6752061 7 1.303975 0.0021867907 1.43019364 0.0052628464 3.3960804 8 1.303972 0.0027728878 0.96796815 0.0089258322 3.0007010 9 1.303977 0.0024740803 -0.99739644 0.0064602526 1.5554086 11 1.304268 0.0022880702 0.21694869 0.0058177060 2.7077584 12 1.304591 0.0005696804 2.22228347 0.0021805854 5.6770223 13 1.304933 -0.0051790840 -2.53143534 0.0036681164 3.3707179 15 1.302784 0.0017053455 0.25320733 0.0017232737 0.2928416 16 1.303375 -0.0029250323 1.61845986 0.0046856083 4.3668377 17 1.303630 -0.0004398484 -0.04786068 0.0023695897 1.4877264 18 1.303874 0.0004993342 -0.94266234 0.0003535534 1.5579503 20 1.299828 0.0018564182 2.76603262 0.0049168631 6.7966593 21 1.299861 -0.0034330656 5.55036483 0.0024306796 3.9297700 25 1.298150 0.0041182403 -5.63684295 0.0041558192 5.6492417 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 474.579 co2l1 = 1.016 co2l0 = 2.506" [1] "co2l0 = -201.04 co2l1 = 0.232" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "77 out of 665 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "588 out of 1090 1-min values rejected as stack air" [1] "469 out of 775 Line 1 1-min values rejected as stack air" [1] "119 out of 315 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"