[1] "2025-04-30 00:04:44 MDT" [1] "1505" "150528" "d148" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150528a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:04:48 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.846, ave o2scale2 = 0.762" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "2 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.846, ave o2scale2 = 0.762" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "4 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:04:49 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:04:49 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:05:07 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:05:09 MDT" [1] "reading in recalculated plot titles" [1] "Removed 4 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1432 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:05:11 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.018 co2off = 474.68 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 12 [5,] 13 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 29 38 0.02184028 0.02811389 0.02567473 2 -67.20721 364.5221 3 2 39 48 0.02881053 0.03507645 0.03264027 2 -88.37877 477.0186 4 5 49 58 0.03577214 0.04203125 0.04098804 NA -79.27662 447.8444 6 2 328 337 0.23025463 0.23651389 0.23407962 3 -88.41892 478.6362 7 4 338 347 0.23720946 0.24347014 0.24103545 3 -67.25251 368.1848 8 3 348 357 0.24416551 0.25042587 0.24938252 3 -79.91825 469.4002 10 4 628 637 0.43895839 0.44522179 0.44278518 2 -67.28868 362.0470 11 2 638 647 0.44591713 0.45218041 0.44974455 2 -88.46968 478.9791 13 2 928 937 0.64766372 0.65392708 0.65149217 3 -88.50463 477.7702 14 4 938 947 0.65462225 0.66088192 0.65844739 3 -67.34428 362.1111 15 5 948 957 0.66157734 0.66783600 0.66679299 NA -79.40266 438.1212 16 3 958 967 0.66853139 0.67479094 0.67374793 3 -79.99479 470.8016 20 4 1228 1237 0.85634491 0.86260417 0.86016986 2 -67.39769 364.4250 21 2 1238 1247 0.86329977 0.86956461 0.86712548 2 -88.57657 479.3281 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.189237 1.319694 0.0017665820 2.7851478 0.004656257 7.3748334 3 1.189238 1.319705 -0.0009498722 2.3999236 0.003330184 6.5219073 4 1.189124 1.319574 -0.0019966722 9.5712063 0.001414214 12.5450057 6 1.187528 1.317867 0.0009065155 1.1709791 0.006850749 4.1786306 7 1.187268 1.317583 -0.0008102119 2.2772294 0.005061391 8.5063058 8 1.187191 1.317528 0.0004917521 -2.1762232 0.002420153 4.3473618 10 1.184423 1.314621 0.0008040154 2.3632649 0.002431985 6.3291989 11 1.184333 1.314532 -0.0014230021 1.3052733 0.004570436 3.6119596 13 1.180815 1.310805 0.0010892685 2.3506876 0.003844929 6.9920369 14 1.180707 1.310698 0.0029222899 2.8909633 0.009741067 9.3829636 15 1.180605 1.310608 -0.0034333514 0.6615584 0.002430680 0.9737926 16 1.180370 1.310354 0.0007080368 -0.3781545 0.001981763 0.5328120 20 1.174293 1.303736 0.0016284550 0.9999036 0.004844801 3.3147986 21 1.174142 1.303582 -0.0004584595 0.9032304 0.002171867 6.3331764 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 474.571 co2l1 = 1.016 co2l0 = 1.212" [1] "co2l0 = -197.33 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "185 out of 535 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "350 out of 1236 1-min values rejected as stack air" [1] "314 out of 1118 Line 1 1-min values rejected as stack air" [1] "36 out of 118 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"