[1] "2025-04-30 00:04:11 MDT" [1] "1505" "150527" "d147" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150527a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:04:15 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.84, ave o2scale2 = 0.757" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.84, ave o2scale2 = 0.757" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "2 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:04:15 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:04:15 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:04:35 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:04:36 MDT" [1] "reading in recalculated plot titles" [1] "Removed 2 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1434 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:04:39 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.018 co2off = 474.77 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.06 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 266 275 0.1866316 0.1928912 0.1904567 2 -67.17750 360.9701 1.191033 3 2 276 285 0.1935868 0.1998461 0.1974118 2 -88.35227 480.6469 1.191147 5 2 566 575 0.3953138 0.4015868 0.3991466 3 -88.36873 476.9682 1.190906 6 4 576 585 0.4022824 0.4085428 0.4061083 3 -67.18065 363.0349 1.190933 7 5 586 595 0.4092381 0.4155294 0.4144792 NA -79.23147 433.2280 1.190902 8 3 596 605 0.4162286 0.4224884 0.4214450 3 -79.83288 468.6032 1.190573 10 4 866 875 0.6041140 0.6103813 0.6079426 2 -67.19357 362.3432 1.190671 11 2 876 885 0.6110775 0.6173405 0.6149052 2 -88.36394 478.5516 1.190763 13 2 1166 1175 0.8129490 0.8192199 0.8167816 3 -88.36323 476.0193 1.190010 14 4 1176 1185 0.8199160 0.8261794 0.8237434 3 -67.19490 350.8929 1.189967 15 3 1186 1195 0.8268762 0.8331382 0.8320945 3 -79.83884 473.0806 1.190030 jfcv2 co2slp o2slp co2sd o2sd 2 1.321072 0.0001767264 1.7303097 0.004821825 5.580813 3 1.321193 -0.0009458844 2.1392214 0.003256336 6.462139 5 1.321145 0.0024098225 0.9902262 0.007440819 4.834300 6 1.321146 0.0048663900 1.5049700 0.012840146 5.794297 7 1.321142 -0.0010523709 -2.3724298 0.000751301 3.386402 8 1.320794 0.0006752279 2.2146496 0.003081381 2.925151 10 1.321034 0.0014064602 2.6981281 0.005727385 8.910493 11 1.321127 0.0006623552 -1.4706659 0.002416230 5.038167 13 1.320404 0.0003157867 1.4518924 0.003106003 11.325540 14 1.320389 0.0028600684 4.1342718 0.010840562 15.687963 15 1.320456 0.0016124609 3.1525393 0.005514281 4.309008 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 474.447 co2l1 = 1.016 co2l0 = 2.129" [1] "co2l0 = -192.65 co2l1 = 0.212" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "66 out of 152 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "86 out of 1292 1-min values rejected as stack air" [1] "86 out of 1292 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"