[1] "2025-04-30 00:03:39 MDT" [1] "1505" "150526" "d146" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150526a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:03:43 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.844, ave o2scale2 = 0.759" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "7 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.844, ave o2scale2 = 0.759" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "9 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:03:44 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:03:44 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:04:02 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:04:03 MDT" [1] "reading in recalculated plot titles" [1] "Removed 9 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1427 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:04:06 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.018 co2off = 474.67 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [5,] 13 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 203 212 0.1430972 0.1493602 0.1469242 3 -88.37290 475.8716 1.179803 3 4 213 222 0.1500556 0.1563151 0.1538810 3 -67.20003 365.8659 1.179816 4 5 223 232 0.1570105 0.1632739 0.1622303 NA -79.27831 434.9361 1.179931 5 3 233 242 0.1639692 0.1702326 0.1691892 3 -79.85980 472.6480 1.180055 8 4 503 512 0.3517956 0.3580586 0.3556212 2 -67.19413 361.9391 1.183121 9 2 513 522 0.3587546 0.3650139 0.3625796 2 -88.35834 477.4127 1.183274 13 2 803 812 0.5605017 0.5667609 0.5643268 3 -88.32814 479.5784 1.186552 14 4 813 822 0.5674563 0.5737161 0.5712819 3 -67.15222 365.9649 1.186376 15 3 823 832 0.5744115 0.5806713 0.5796279 3 -79.79875 469.4868 1.186624 19 4 1096 1105 0.7691782 0.7754455 0.7730103 2 -67.15441 363.3421 1.192264 20 2 1106 1115 0.7761410 0.7824038 0.7799696 2 -88.31274 473.1088 1.192461 21 5 1116 1125 0.7830992 0.7893585 0.7883153 NA -79.20113 439.5365 1.192387 23 2 1396 1405 0.9778718 0.9841308 0.9816970 3 -88.35641 475.8744 1.191174 24 4 1406 1415 0.9848264 0.9910860 0.9886517 3 -67.17988 361.0631 1.191094 25 3 1416 1425 0.9917814 0.9980445 0.9970004 3 -79.83146 465.5406 1.191145 jfcv2 co2slp o2slp co2sd o2sd 2 1.311759 0.0015819241 2.0618140 4.483842e-03 5.711896 3 1.311793 0.0038470354 1.4882688 1.109511e-02 5.531947 4 1.311937 0.0001248439 -1.6840473 8.838835e-05 2.523180 5 1.312026 -0.0002511307 -0.6955257 2.565166e-03 1.966758 8 1.315357 0.0020451998 2.1268137 5.257117e-03 5.602523 9 1.315537 0.0018038264 2.7287838 4.940381e-03 7.758490 13 1.319235 0.0010430951 1.6473158 3.240155e-03 5.785772 14 1.319092 0.0019018277 1.2450728 6.051398e-03 3.693782 15 1.319327 0.0026281174 -1.1363783 7.334635e-03 1.529430 19 1.320699 0.0029889525 2.4324001 7.383314e-03 6.601577 20 1.321115 0.0009798648 1.5150658 5.174029e-03 4.080648 21 1.321233 0.0002496879 -2.4645913 1.767767e-04 3.474851 23 1.321021 0.0004458334 2.6236214 1.657639e-03 9.861265 24 1.320968 0.0041209479 0.3218821 1.081477e-02 6.649168 25 1.321072 0.0024390375 -1.0995179 7.057001e-03 7.304774 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 474.455 co2l1 = 1.016 co2l0 = 1.751" [1] "co2l0 = -197.84 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "145 out of 310 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "165 out of 1218 1-min values rejected as stack air" [1] "140 out of 892 Line 1 1-min values rejected as stack air" [1] "25 out of 326 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"