[1] "2025-04-30 00:03:08 MDT" [1] "1505" "150525" "d145" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150525a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:03:13 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.856, ave o2scale2 = 0.769" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.856, ave o2scale2 = 0.769" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:03:13 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:03:13 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:03:30 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:03:31 MDT" [1] "reading in recalculated plot titles" [1] "TEMP: 1436 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:03:34 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.016 co2off = 474.66 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 142 151 0.09957639 0.1058356 0.1034017 2 -67.33097 363.5436 3 2 152 161 0.10653328 0.1127940 0.1103601 2 -88.52042 478.1587 7 2 442 451 0.30827182 0.3145352 0.3120992 3 -88.51083 476.1062 8 4 452 461 0.31523053 0.3214937 0.3190588 3 -67.32414 364.1887 9 3 462 471 0.32218895 0.3284485 0.3274054 3 -79.98098 468.8976 11 4 742 751 0.51700556 0.5232650 0.5208307 2 -67.32578 359.3238 12 2 752 761 0.52396065 0.5302230 0.5277860 2 -88.49652 479.5878 13 5 762 771 0.53091898 0.5371783 0.5361349 NA -79.37034 437.8036 15 2 1042 1051 0.72568061 0.7319398 0.7295057 3 -88.45380 472.1816 16 4 1052 1061 0.73263542 0.7388975 0.7364626 3 -67.27793 368.7560 17 3 1062 1071 0.73959280 0.7458559 0.7448128 3 -79.92790 469.1480 19 4 1342 1351 0.93436128 0.9406204 0.9381864 2 -67.25657 362.4687 20 2 1352 1361 0.94131597 0.9475787 0.9451447 2 -88.42752 478.5072 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.162094 1.292387 1.283955e-03 1.98494570 3.922804e-03 5.0566719 3 1.162176 1.292502 1.827100e-04 1.49553320 4.201104e-03 3.9120173 7 1.165542 1.296308 -1.386266e-03 2.40342701 4.204954e-03 5.9272428 8 1.165697 1.296504 3.049155e-03 -0.40110274 7.969792e-03 1.9563943 9 1.166214 1.297077 9.063439e-04 -3.36469552 2.525042e-03 4.6882749 11 1.169488 1.300746 2.753048e-03 0.76788648 7.177205e-03 3.3163684 12 1.169575 1.300837 1.867218e-03 3.42182239 5.732596e-03 8.5081040 13 1.169635 1.300896 -6.239082e-05 -0.23037657 4.419417e-05 0.8364553 15 1.173261 1.304878 -3.410716e-04 2.00184124 2.674374e-03 11.7102988 16 1.173313 1.304918 2.593122e-03 2.21877857 8.746264e-03 7.4563686 17 1.173641 1.305231 2.607579e-03 -1.77721622 7.240907e-03 3.5125662 19 1.176352 1.308117 3.128903e-03 -0.07034703 8.025033e-03 8.3770830 20 1.176584 1.308368 -3.878797e-04 3.55439800 1.764528e-03 10.0481861 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 474.553 co2l1 = 1.016 co2l0 = 1.864" [1] "co2l0 = -197.53 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "112 out of 155 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "43 out of 1250 1-min values rejected as stack air" [1] "43 out of 1132 Line 1 1-min values rejected as stack air" [1] "0 out of 118 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"