[1] "2025-04-30 00:02:13 MDT" [1] "1505" "150523" "d143" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150523a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85925 63 [1] 85925 [1] 85925 [1] "testing skipping spike filter" [1] 85925 [1] 85925 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:02:17 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.88, ave o2scale2 = 0.792" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "120 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.88, ave o2scale2 = 0.792" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "121 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:02:17 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:02:17 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:02:27 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:02:29 MDT" [1] "reading in recalculated plot titles" [1] "Removed 121 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 1 row(s) with variable TFCELL" [1] "TEMP: 1309 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:02:33 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.015 co2off = 470.48 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 7.95 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 12 [5,] 14 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 100 109 0.08943504 0.09569907 0.09326211 3 -88.78627 479.6877 3 4 110 119 0.09639468 0.10265796 0.10022232 3 -67.58379 366.7870 4 5 120 129 0.10335336 0.10961331 0.10856994 NA -79.69319 438.6079 5 3 130 137 0.11100411 0.11656829 0.11622041 3 -80.25804 469.3982 7 4 383 392 0.29812462 0.30438417 0.30194978 2 -67.56434 373.9341 8 2 393 402 0.30507960 0.31133877 0.30890453 2 -88.79127 474.9398 12 2 675 681 0.50899256 0.51316548 0.51177436 3 -88.82696 482.2665 13 4 682 691 0.51386091 0.52012037 0.51768595 3 -67.61835 364.0355 14 3 692 701 0.52081597 0.52707520 0.52603184 3 -80.29783 471.5545 16 3 842 846 0.64196837 0.64475009 0.64544580 3 -80.30923 472.5169 17 2 847 856 0.64544601 0.65170501 0.64927102 3 -88.85123 474.1078 18 4 857 866 0.65240087 0.65866039 0.65622631 3 -67.63758 370.3134 19 5 867 876 0.65935573 0.66561490 0.66457190 NA -80.05816 443.6384 21 4 1125 1131 0.84855324 0.85342130 0.85203054 2 -67.63697 363.1417 22 2 1132 1136 0.85411690 0.85689864 0.85620330 2 -88.83765 474.2795 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.138079 1.264077 1.055505e-04 3.7499385 0.0014255129 13.011224 3 1.137914 1.263921 1.322246e-03 2.3842444 0.0043746094 7.172700 4 1.137710 1.263700 1.123315e-03 -6.9650465 0.0007954951 9.667166 5 1.137214 1.263137 6.154555e-04 5.2204036 0.0017699385 3.698304 7 1.138312 1.264364 -5.942967e-05 1.3853504 0.0020161181 7.639840 8 1.138273 1.264337 -7.845066e-04 1.1866439 0.0033517303 5.095967 12 1.135531 1.261091 1.098322e-03 1.9640853 0.0023599854 3.742511 13 1.135329 1.261009 1.886112e-03 -2.5103693 0.0054975581 6.974724 14 1.135304 1.260983 8.025234e-05 3.3194414 0.0028137398 4.589134 16 1.134208 1.259723 2.932858e-03 -9.7766515 0.0029383864 10.152745 17 1.134252 1.259668 -7.496807e-04 1.4590029 0.0027099226 4.159283 18 1.134280 1.259768 3.119815e-04 0.6392227 0.0031736833 8.001550 19 1.134492 1.259984 5.617744e-04 7.7064512 0.0003977476 10.115299 21 1.138104 1.264608 -1.435697e-04 -0.3830541 0.0006767627 1.846062 22 1.138695 1.265006 -1.123571e-03 3.4529926 0.0011255786 3.563289 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 474.761 co2l1 = 1.014 co2l0 = 1.668" [1] "co2l0 = -201.41 co2l1 = 0.231" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "99 out of 231 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "132 out of 1121 1-min values rejected as stack air" [1] "127 out of 1068 Line 1 1-min values rejected as stack air" [1] "5 out of 53 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"