[1] "2025-04-30 00:01:40 MDT" [1] "1505" "150522" "d142" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150522a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85920 63 [1] 85920 [1] 85920 [1] "testing skipping spike filter" [1] 85920 [1] 85920 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:01:44 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.88, ave o2scale2 = 0.792" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "71 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.88, ave o2scale2 = 0.792" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "69 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:01:44 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:01:44 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:02:01 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:02:03 MDT" [1] "reading in recalculated plot titles" [1] "Removed 69 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1362 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:02:08 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.015 co2off = 479.09 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.07 minutes" [1] "Average Cal: 8.82 minutes" [1] "Shortest Cal: 6.05 minutes" [1] "Longest Cal: 9.08 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 66 75 0.04637405 0.05265223 0.05020148 2 -67.48500 361.9981 3 2 76 84 0.05334757 0.05960749 0.05702404 2 -88.68981 479.5775 5 2 365 374 0.25509693 0.26135648 0.25892228 3 -88.74741 474.8884 6 4 375 384 0.26205208 0.26831505 0.26588087 3 -67.54523 361.0330 7 3 385 394 0.26901042 0.27527034 0.27422723 3 -80.19888 469.7227 11 4 649 655 0.46566163 0.46986027 0.46846064 2 -67.60518 370.3620 12 2 656 664 0.47056085 0.47685877 0.47445934 2 -88.80560 471.5952 13 5 665 674 0.47755842 0.48385799 0.48280844 NA -79.69781 433.9853 15 2 932 941 0.67214468 0.67844146 0.67599242 3 -88.81957 475.4235 16 4 942 951 0.67914126 0.68544334 0.68299142 3 -67.61223 363.8531 17 3 952 961 0.68614352 0.69244178 0.69139120 3 -80.27752 466.0286 19 4 1215 1224 0.88069797 0.88699719 0.88454770 2 -67.61455 361.6157 20 2 1225 1234 0.88769734 0.89399413 0.89154535 2 -88.81756 477.3056 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.138153 1.264040 0.0002361296 1.1238844 0.003069144 8.249699 3 1.138121 1.264074 -0.0001126965 3.7489728 0.002409311 10.339861 5 1.136753 1.262451 0.0004970435 1.9000024 0.003223092 5.186333 6 1.136604 1.262281 0.0040828428 0.3429069 0.010815403 6.457783 7 1.136389 1.262057 0.0023252878 2.1537727 0.006193765 3.017725 11 1.134191 1.259947 0.0024996364 -0.2598142 0.004662307 6.544892 12 1.134783 1.260415 0.0020150037 3.6518658 0.006600854 10.115252 13 1.134880 1.260648 0.0021092684 0.5516052 0.001502602 3.764818 15 1.136738 1.262598 0.0013521917 1.6459635 0.003462238 6.123926 16 1.136607 1.262447 0.0027224026 4.3553427 0.008574239 10.789465 17 1.136580 1.262419 0.0004392250 -2.6793243 0.001470293 3.597302 19 1.137520 1.263481 -0.0006548796 1.6266122 0.002844449 4.290809 20 1.137647 1.263639 0.0001269964 2.9803425 0.002466064 9.166275 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 474.748 co2l1 = 1.015 co2l0 = 2.452" [1] "co2l0 = -198.82 co2l1 = 0.227" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "64 out of 335 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "271 out of 1181 1-min values rejected as stack air" [1] "252 out of 1063 Line 1 1-min values rejected as stack air" [1] "19 out of 118 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"