[1] "2025-04-30 00:00:43 MDT" [1] "1505" "150519" "d139" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150519a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:00:47 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.844, ave o2scale2 = 0.759" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "31 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.844, ave o2scale2 = 0.759" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "33 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:00:47 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:00:47 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:01:04 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:01:06 MDT" [1] "reading in recalculated plot titles" [1] "Removed 33 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1403 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:01:09 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.018 co2off = 474.02 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.08 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 63 72 0.04503602 0.05129968 0.04886385 2 -66.48576 364.7644 3 2 73 82 0.05201155 0.05827486 0.05583965 2 -87.68239 478.1821 5 2 358 367 0.25375347 0.26001337 0.25757902 3 -87.70038 478.6174 6 4 368 377 0.26070871 0.26696872 0.26453404 3 -66.51119 365.3132 7 5 378 387 0.26766403 0.27392708 0.27288294 NA -78.64738 437.1459 8 3 388 397 0.27462269 0.28088212 0.27983879 3 -79.16488 472.7066 10 4 632 641 0.46243724 0.46869641 0.46626216 2 -66.48695 363.8064 11 2 642 651 0.46939172 0.47565162 0.47321727 2 -87.67024 480.5100 13 2 932 941 0.67111458 0.67737830 0.67494241 3 -87.67140 479.7547 14 4 942 951 0.67807425 0.68433449 0.68189992 3 -66.48674 360.9477 15 3 952 961 0.68503009 0.69129294 0.69024965 3 -79.13898 467.8044 17 4 1232 1241 0.88006484 0.88632376 0.88388960 2 -66.50951 363.3624 18 2 1242 1251 0.88701918 0.89327894 0.89084464 2 -87.67481 479.1412 19 5 1252 1261 0.89397784 0.90028241 0.89923147 NA -78.58966 439.2535 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.176717 1.309353 2.558651e-03 -0.3809249 0.007322333 3.848332 3 1.176917 1.309550 -1.039172e-03 2.5217701 0.003565514 6.302983 5 1.179746 1.312841 3.335526e-04 2.1685200 0.002471136 5.833928 6 1.179864 1.312994 4.137646e-03 2.0917179 0.011011206 9.222549 7 1.180208 1.313384 -4.992927e-03 -1.4291624 0.003535534 2.086933 8 1.180514 1.313704 1.054235e-03 0.3676419 0.004314174 2.165920 10 1.186547 1.320503 1.823016e-03 2.6432185 0.006084116 6.833429 11 1.186852 1.320849 7.203091e-05 2.2697234 0.002060859 7.822203 13 1.189460 1.323696 1.375621e-03 2.3102814 0.005387438 6.302300 14 1.189580 1.323797 2.218811e-03 2.2632887 0.007084742 6.376027 15 1.189704 1.323885 6.845647e-04 -4.9499340 0.004733259 6.742388 17 1.190524 1.324885 1.418212e-03 0.7504550 0.004539440 5.023223 18 1.191055 1.325471 1.295741e-03 0.9333572 0.003476965 3.647421 19 1.190948 1.325307 -5.141654e-03 3.0625465 0.003668116 4.261883 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 473.719 co2l1 = 1.016 co2l0 = 2.046" [1] "co2l0 = -196.15 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "74 out of 201 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "127 out of 1211 1-min values rejected as stack air" [1] "127 out of 1211 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"