[1] "2025-04-30 00:00:09 MDT" [1] "1505" "150518" "d138" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150518a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:00:13 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.85, ave o2scale2 = 0.764" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "59 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.85, ave o2scale2 = 0.764" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "59 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:00:14 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:00:14 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:00:31 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:00:33 MDT" [1] "reading in recalculated plot titles" [1] "Removed 59 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1377 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:00:38 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.016 co2off = 473.79 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.48 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.04 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [5,] 13 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 2 1 10 0.001534086 0.007797338 0.005360937 3 -87.41477 471.6402 2 4 11 20 0.008492564 0.014751505 0.012317520 3 -66.20782 359.1184 3 5 21 30 0.015446904 0.021706366 0.020663317 NA -78.12266 430.0048 4 3 31 40 0.022401678 0.028661198 0.027618034 3 -78.88705 474.8498 6 4 296 305 0.210245428 0.216505237 0.214071087 2 -66.27821 364.4523 7 2 306 314 0.217200637 0.223460532 0.220877017 2 -87.47340 479.3135 9 2 572 581 0.418953443 0.425229253 0.422794325 3 -87.52583 479.9450 10 4 582 590 0.425925058 0.432185185 0.429800037 3 -66.32210 364.5306 11 3 591 596 0.435670891 0.439148640 0.439496340 3 -78.96022 457.4782 13 4 852 861 0.627668981 0.633928183 0.631493880 2 -66.35982 363.8006 14 2 862 871 0.634623351 0.640883102 0.638448893 2 -87.55352 475.0970 15 5 872 881 0.641578588 0.647837963 0.646794633 NA -78.29688 438.6660 17 2 1147 1154 0.837752402 0.842620486 0.840882099 3 -87.63935 475.8075 18 4 1155 1162 0.843316001 0.848185185 0.846446238 3 -66.43775 363.7266 19 3 1163 1172 0.850271238 0.856530440 0.855487442 3 -79.10971 471.3628 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.173032 1.305194 -0.0007729001 2.32217001 0.0031900266 6.7780724 2 1.172838 1.304987 0.0003203311 2.82807721 0.0051508968 7.1445431 3 1.172679 1.304928 0.0010610411 13.19546116 0.0007513010 18.4902871 4 1.172635 1.304869 0.0017287921 1.46356237 0.0046174453 1.9496395 6 1.175086 1.307522 0.0017436163 2.83081689 0.0050624380 8.3766173 7 1.175171 1.307504 0.0015678495 3.26784205 0.0052545697 9.9083307 9 1.178297 1.310857 0.0008507313 2.65264769 0.0027618959 7.9870159 10 1.178345 1.310833 0.0055417123 1.73793575 0.0160864715 5.8533418 11 1.178516 1.311027 -0.0005865931 -1.22318504 0.0030437350 0.8661117 13 1.178189 1.310820 0.0015000490 0.83428949 0.0045062503 8.1998416 14 1.178309 1.310949 0.0021250785 1.67086540 0.0066000837 5.3817410 15 1.178339 1.310982 0.0012479720 -2.32240591 0.0008838835 3.0901051 17 1.176743 1.309311 0.0028996785 -0.03575989 0.0054587468 1.1798835 18 1.176563 1.309093 0.0042609739 5.36266873 0.0102456546 10.4625042 19 1.176304 1.308816 0.0008478380 -0.45474654 0.0051971122 1.8449682 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 473.491 co2l1 = 1.015 co2l0 = 2.348" [1] "co2l0 = -197.07 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "0 out of 0 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1182 1-min values rejected as stack air" [1] "0 out of 1182 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"