[1] "2025-04-29 23:59:16 MDT" [1] "1505" "150516" "d136" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150516a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 81005 63 [1] 81005 [1] 81005 [1] "testing skipping spike filter" [1] 81005 [1] 81005 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:59:20 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.864, ave o2scale2 = 0.777" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "46 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.864, ave o2scale2 = 0.777" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "46 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:59:20 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:59:20 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:59:28 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:59:29 MDT" [1] "reading in recalculated plot titles" [1] "Removed 46 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 3 row(s) with variable TFCELL" [1] "TEMP: 1300 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:59:32 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.014 co2off = 477.12 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.21 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.3 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 12 13 [6,] 15 16 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 3 2 6 0.05791626 0.06418872 0.06534843 2 -78.26220 480.3458 4 4 15 24 0.07188718 0.07834523 0.07583380 2 -65.73762 384.1945 5 5 25 34 0.07904450 0.08542402 0.08436235 NA -77.66650 444.2719 7 4 293 302 0.26631560 0.27257870 0.27014299 2 -65.79362 360.3960 8 2 303 312 0.27327431 0.27953356 0.27709923 2 -87.02518 471.5620 10 2 588 596 0.47483449 0.48040972 0.47831512 3 -87.08189 470.4506 11 4 597 605 0.48110619 0.48667364 0.48458497 3 -65.87433 357.7215 12 3 606 614 0.48736921 0.49293637 0.49224103 3 -78.54505 467.4186 14 4 884 893 0.68355304 0.68981250 0.68737803 2 -65.95377 359.1740 15 2 894 903 0.69050810 0.69676713 0.69433292 2 -87.18835 477.3254 16 5 904 913 0.69746296 0.70372315 0.70267969 NA -77.93328 436.9016 19 2 957 966 0.75636128 0.76262037 0.76018638 2 -87.24020 486.6518 20 4 967 976 0.76331606 0.76957636 0.76714181 2 -66.02053 382.5822 21 5 977 986 0.77027167 0.77653455 0.77549128 NA -78.56434 440.3073 23 4 1244 1250 0.96017705 0.96434954 0.96295853 2 -66.11866 369.3414 24 2 1251 1260 0.96504511 0.97130790 0.96887371 2 -87.34666 477.3186 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.157645 1.288486 -0.0374760801 -8.50274246 0.0408160142 18.597301 4 1.158194 1.288720 -0.0017757040 -6.64297672 0.0058038470 22.962620 5 1.158469 1.288946 0.0012481278 5.93544547 0.0008838835 8.227767 7 1.161330 1.292142 -0.0003543536 2.31084835 0.0019070000 6.291926 8 1.161390 1.292219 0.0010869434 3.58240824 0.0033762295 9.384994 10 1.158914 1.289026 0.0011218971 1.90076613 0.0044668505 6.956127 11 1.158822 1.288763 0.0057737631 2.27249678 0.0142437264 5.953833 12 1.158707 1.288894 0.0042143994 0.78831517 0.0093655806 1.267423 14 1.155764 1.285204 0.0032463597 1.82808508 0.0081628753 9.491888 15 1.155571 1.284840 -0.0002369567 -0.05202918 0.0033230018 3.507790 16 1.155193 1.284415 0.0003118503 -3.13998213 0.0002209709 4.643663 19 1.152948 1.281723 -0.0009466179 -1.44777447 0.0029685385 17.790267 20 1.153103 1.281981 0.0012018359 -1.74910913 0.0039183918 24.570361 21 1.153063 1.282107 0.0054298078 5.48353221 0.0038448931 7.157073 23 1.152569 1.281306 0.0000123434 0.70725145 0.0033797998 4.445665 24 1.152536 1.281160 -0.0017409176 2.93165585 0.0048041948 7.578410 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 473.166 co2l1 = 1.016 co2l0 = 2.127" [1] "co2l0 = -201.43 co2l1 = 0.23" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "89 out of 185 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "96 out of 1060 1-min values rejected as stack air" [1] "96 out of 1039 Line 1 1-min values rejected as stack air" [1] "0 out of 21 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"