[1] "2017-04-07 13:36:01 MDT"
[1] "1505"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1505/150516.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1505/150517.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1505/150518.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1505/150519.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1505/150520.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1505/150521.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1505/150522.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1505/150523.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1505/150524.html"  
[10] "/net/www/docs/homes/stephens/GO2/1505/150525.html"  
[11] "/net/www/docs/homes/stephens/GO2/1505/150526.html"  
[12] "/net/www/docs/homes/stephens/GO2/1505/150527.html"  
[13] "/net/www/docs/homes/stephens/GO2/1505/150528.html"  
[14] "/net/www/docs/homes/stephens/GO2/1505/150529.html"  
[15] "/net/www/docs/homes/stephens/GO2/1505/150530.html"  
[16] "/net/www/docs/homes/stephens/GO2/1505/150531.html"  
[17] "/net/www/docs/homes/stephens/GO2/1505/150601.html"  
[18] "/net/www/docs/homes/stephens/GO2/1505/150602.html"  
[19] "/net/www/docs/homes/stephens/GO2/1505/150603.html"  
[20] "/net/www/docs/homes/stephens/GO2/1505/150604.html"  
[21] "/net/www/docs/homes/stephens/GO2/1505/150605.html"  
[22] "/net/www/docs/homes/stephens/GO2/1505/150606.html"  
[23] "/net/www/docs/homes/stephens/GO2/1505/150607.html"  
[24] "/net/www/docs/homes/stephens/GO2/1505/150608.html"  
[25] "/net/www/docs/homes/stephens/GO2/1505/150609.html"  
[26] "/net/www/docs/homes/stephens/GO2/1505/150610.html"  
[27] "/net/www/docs/homes/stephens/GO2/1505/150611.html"  
[28] "/net/www/docs/homes/stephens/GO2/1505/150612.html"  
[29] "/net/www/docs/homes/stephens/GO2/1505/150613.html"  
[30] "/net/www/docs/homes/stephens/GO2/1505/150614.html"  
[31] "/net/www/docs/homes/stephens/GO2/1505/150615.html"  
[32] "/net/www/docs/homes/stephens/GO2/1505/150616.html"  
[33] "/net/www/docs/homes/stephens/GO2/1505/150617.html"  
[34] "/net/www/docs/homes/stephens/GO2/1505/lmg_1505.html"
 [1] "/net/www/docs/homes/stephens/GO2/1505/150516.html"
 [2] "/net/www/docs/homes/stephens/GO2/1505/150517.html"
 [3] "/net/www/docs/homes/stephens/GO2/1505/150518.html"
 [4] "/net/www/docs/homes/stephens/GO2/1505/150519.html"
 [5] "/net/www/docs/homes/stephens/GO2/1505/150520.html"
 [6] "/net/www/docs/homes/stephens/GO2/1505/150521.html"
 [7] "/net/www/docs/homes/stephens/GO2/1505/150522.html"
 [8] "/net/www/docs/homes/stephens/GO2/1505/150523.html"
 [9] "/net/www/docs/homes/stephens/GO2/1505/150524.html"
[10] "/net/www/docs/homes/stephens/GO2/1505/150525.html"
[11] "/net/www/docs/homes/stephens/GO2/1505/150526.html"
[12] "/net/www/docs/homes/stephens/GO2/1505/150527.html"
[13] "/net/www/docs/homes/stephens/GO2/1505/150528.html"
[14] "/net/www/docs/homes/stephens/GO2/1505/150529.html"
[15] "/net/www/docs/homes/stephens/GO2/1505/150530.html"
[16] "/net/www/docs/homes/stephens/GO2/1505/150531.html"
[17] "/net/www/docs/homes/stephens/GO2/1505/150601.html"
[18] "/net/www/docs/homes/stephens/GO2/1505/150602.html"
[19] "/net/www/docs/homes/stephens/GO2/1505/150603.html"
[20] "/net/www/docs/homes/stephens/GO2/1505/150604.html"
[21] "/net/www/docs/homes/stephens/GO2/1505/150605.html"
[22] "/net/www/docs/homes/stephens/GO2/1505/150606.html"
[23] "/net/www/docs/homes/stephens/GO2/1505/150607.html"
[24] "/net/www/docs/homes/stephens/GO2/1505/150608.html"
[25] "/net/www/docs/homes/stephens/GO2/1505/150609.html"
[26] "/net/www/docs/homes/stephens/GO2/1505/150610.html"
[27] "/net/www/docs/homes/stephens/GO2/1505/150611.html"
[28] "/net/www/docs/homes/stephens/GO2/1505/150612.html"
[29] "/net/www/docs/homes/stephens/GO2/1505/150613.html"
[30] "/net/www/docs/homes/stephens/GO2/1505/150614.html"
[31] "/net/www/docs/homes/stephens/GO2/1505/150615.html"
[32] "/net/www/docs/homes/stephens/GO2/1505/150616.html"
[33] "/net/www/docs/homes/stephens/GO2/1505/150617.html"
[1] "150516" "150617"
 [1] "150516" "150517" "150518" "150519" "150520" "150521" "150522" "150523"
 [9] "150524" "150525" "150526" "150527" "150528" "150529" "150530" "150531"
[17] "150601" "150602" "150603" "150604" "150605" "150606" "150607" "150608"
[25] "150609" "150610" "150611" "150612" "150613" "150614" "150615" "150616"
[33] "150617"
[1] "000000" "999999"
[1] "150516_mr_proc.txt, 150516_cal_periods.txt, 150516_cal_param.txt,1300jogs"
[1] "150517_mr_proc.txt, 150517_cal_periods.txt, 150517_cal_param.txt,1392jogs"
[1] "150518_mr_proc.txt, 150518_cal_periods.txt, 150518_cal_param.txt,1377jogs"
[1] "150519_mr_proc.txt, 150519_cal_periods.txt, 150519_cal_param.txt,1403jogs"
[1] "150520_mr_proc.txt, 150520_cal_periods.txt, 150520_cal_param.txt,113jogs"
[1] "150521_mr_proc.txt, 150521_cal_periods.txt, 150521_cal_param.txt,179jogs"
[1] "150522_mr_proc.txt, 150522_cal_periods.txt, 150522_cal_param.txt,1362jogs"
[1] "150523_mr_proc.txt, 150523_cal_periods.txt, 150523_cal_param.txt,1309jogs"
[1] "150524_mr_proc.txt, 150524_cal_periods.txt, 150524_cal_param.txt,1373jogs"
[1] "150525_mr_proc.txt, 150525_cal_periods.txt, 150525_cal_param.txt,1436jogs"
[1] "150526_mr_proc.txt, 150526_cal_periods.txt, 150526_cal_param.txt,1427jogs"
[1] "150527_mr_proc.txt, 150527_cal_periods.txt, 150527_cal_param.txt,1434jogs"
[1] "150528_mr_proc.txt, 150528_cal_periods.txt, 150528_cal_param.txt,1432jogs"
[1] "150529_mr_proc.txt, 150529_cal_periods.txt, 150529_cal_param.txt,1349jogs"
[1] "150530_mr_proc.txt, 150530_cal_periods.txt, 150530_cal_param.txt,1284jogs"
[1] "150531_mr_proc.txt, 150531_cal_periods.txt, 150531_cal_param.txt,1260jogs"
[1] "150601_mr_proc.txt, 150601_cal_periods.txt, 150601_cal_param.txt,1405jogs"
[1] "150602_mr_proc.txt, 150602_cal_periods.txt, 150602_cal_param.txt,1427jogs"
[1] "150603_mr_proc.txt, 150603_cal_periods.txt, 150603_cal_param.txt,1405jogs"
[1] "150604_mr_proc.txt, 150604_cal_periods.txt, 150604_cal_param.txt,1148jogs"
[1] "150605_mr_proc.txt, 150605_cal_periods.txt, 150605_cal_param.txt,1423jogs"
[1] "150606_mr_proc.txt, 150606_cal_periods.txt, 150606_cal_param.txt,1223jogs"
[1] "150607_mr_proc.txt, 150607_cal_periods.txt, 150607_cal_param.txt,1360jogs"
[1] "150608_mr_proc.txt, 150608_cal_periods.txt, 150608_cal_param.txt,1415jogs"
[1] "150609_mr_proc.txt, 150609_cal_periods.txt, 150609_cal_param.txt,1333jogs"
[1] "150610_mr_proc.txt, 150610_cal_periods.txt, 150610_cal_param.txt,1357jogs"
[1] "150611_mr_proc.txt, 150611_cal_periods.txt, 150611_cal_param.txt,1405jogs"
[1] "150612_mr_proc.txt, 150612_cal_periods.txt, 150612_cal_param.txt,1408jogs"
[1] "150613_mr_proc.txt, 150613_cal_periods.txt, 150613_cal_param.txt,1409jogs"
[1] "150614_mr_proc.txt, 150614_cal_periods.txt, 150614_cal_param.txt,1292jogs"
[1] "150615_mr_proc.txt, 150615_cal_periods.txt, 150615_cal_param.txt,1428jogs"
[1] "150616_mr_proc.txt, 150616_cal_periods.txt, 150616_cal_param.txt,1426jogs"
[1] "150617_mr_proc.txt, 150617_cal_periods.txt, 150617_cal_param.txt,365jogs"
[1] "150516" "150617" "d136"   "d168"  
[1] "Calculating derived concentration values"
[1] "2017-04-07 13:38:17 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.859, ave o2scale2 = 0.772"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-04-07 13:38:58 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-04-07 13:39:55 MDT"
[1] "2017-04-07 13:40:07 MDT"
[1] "Reading in cylinder log"
Read 68 records
[1] "Finding cylinder IDs"
Read 420 records
[1] "position 1 cylinder CB08910 description: HS CO2 = 384.48 O2 = -529.1"
[1] "position 2 cylinder CA07671 description: MS CO2 = 393.12 O2 = -532.4"
[1] "position 3 cylinder CB08911 description: LS CO2 = 405.98 O2 = -657.2"
[1] "position 4 cylinder CC332564 description: LT CO2 = 393.92 O2 = -579.3"
[1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.15 O2 = -1145.4"
[1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.32 O2 = -763"
[1] "Plotting jog shapes"
[1] "1505 Valve transient for  Line 1 after Line 2 = 0.51 , 0.44 , 0.35 , 0.04 , -0.01 n = 8"
[1] "1505 Valve transient for  Line 1 after Cal = -0.62 , -0.31 , -0.02 , 0.02 , 0.03 n = 127"
[1] "1505 Valve transient for  Line 2 after Line 1 = 6.53 , 4.42 , 1.35 , 0.16 , 0.09 n = 8"
[1] "1505 Valve transient for  Line 2 after Cal = -0.36 , -0.16 , -0.02 , 0 , 0.03 n = 4"
[1] "1505 Valve transient for  Line 1 after HS = -0.71 , -0.34 , -0.03 , -0.04 , -0.02 n = 39"
[1] "1505 Valve transient for  Line 1 after MS = -0.14 , -0.05 , 0.03 , 0.03 , 0.03 n = 61"
[1] "1505 Valve transient for  Line 1 after LT = -2.86 , -2.1 , -0.62 , 0.06 , 0.09 n = 27"
[1] "1505 Valve transient for  Line 2 after HS = -0.65 , -0.31 , 0.02 , 0 , 0.01 n = 2"
[1] "1505 Valve transient for  Line 2 after MS = -0.19 , -0.1 , -0.02 , -0.03 , -0.04 n = 2"
[1] "1505 Valve transient for  Line 2 after LT = -2.91 , -2.12 , -0.69 , -0.02 , 0.04 n = 1"
[1] "1505 Valve transient for  HS after Line 1 = 0.67 , 0.33 , 0 , 0 , 0 n = 53"
[1] "1505 Valve transient for  HS after Line 2 = 0.64 , 0.31 , -0.01 , -0.01 , -0.01 n = 2"
[1] "1505 Valve transient for  HS after MS = 1.33 , 0.67 , 0 , 0 , 0 n = 3"
[1] "1505 Valve transient for  HS after LS = 3.4 , 1.7 , 0 , 0 , 0 n = 57"
[1] "1505 Valve transient for  MS after Line 1 = 0.01 , 0 , 0 , 0 , 0 n = 3"
[1] "1505 Valve transient for  MS after Line 2 = 0 , 0 , NA , NA , NA n = 1"
[1] "1505 Valve transient for  MS after LS = 2.01 , 1 , -0.01 , -0.01 , 0 n = 42"
[1] "1505 Valve transient for  MS after LT = 1.27 , 0.63 , -0.01 , -0.01 , 0 n = 16"
[1] "1505 Valve transient for  LS after Line 1 = -1.79 , -0.91 , -0.01 , -0.01 , 0 n = 58"
[1] "1505 Valve transient for  LS after Line 2 = -1.78 , -0.9 , -0.01 , -0.01 , -0.01 n = 4"
[1] "1505 Valve transient for  LS after HS = -3.51 , -1.77 , -0.02 , -0.01 , 0 n = 61"
[1] "1505 Valve transient for  LT after Line 1 = 0.08 , 0.07 , 0.06 , 0.04 , 0.03 n = 1"
[1] "1505 Valve transient for  LT after HS = -0.4 , -0.18 , 0.05 , 0.03 , 0.02 n = 20"
[1] "1505 Valve transient for  LT after LS = 0.73 , 0.39 , 0.04 , 0.03 , 0.02 n = 19"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "1435 out of 11630 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "10195 out of 35860 1-min values rejected as stack air"
[1] "9590 out of 33563 Line 1 1-min values rejected as stack air"
[1] "605 out of 2297 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1505loxy.d136"
[1] "LMG1505loxy.d137"
[1] "LMG1505loxy.d138"
[1] "LMG1505loxy.d139"
[1] "LMG1505loxy.d140"
[1] "LMG1505loxy.d141"
[1] "LMG1505loxy.d142"
[1] "LMG1505loxy.d143"
[1] "LMG1505loxy.d144"
[1] "LMG1505loxy.d145"
[1] "LMG1505loxy.d146"
[1] "LMG1505loxy.d147"
[1] "LMG1505loxy.d148"
[1] "LMG1505loxy.d149"
[1] "LMG1505loxy.d150"
[1] "LMG1505loxy.d151"
[1] "LMG1505loxy.d152"
[1] "LMG1505loxy.d153"
[1] "LMG1505loxy.d154"
[1] "LMG1505loxy.d155"
[1] "LMG1505loxy.d156"
[1] "LMG1505loxy.d157"
[1] "LMG1505loxy.d158"
[1] "LMG1505loxy.d159"
[1] "LMG1505loxy.d160"
[1] "LMG1505loxy.d161"
[1] "LMG1505loxy.d162"
[1] "LMG1505loxy.d163"
[1] "LMG1505loxy.d164"
[1] "LMG1505loxy.d165"
[1] "LMG1505loxy.d166"
[1] "LMG1505loxy.d167"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]      [,2]
 [1,]  92.5 0.8417508
 [2,]  97.5 0.6734007
 [3,] 102.5 0.5050505
 [4,] 107.5 0.5050505
 [5,] 112.5 0.8417508
 [6,] 117.5 0.8417508
 [7,] 122.5 0.8417508
 [8,] 127.5 0.1683502
 [9,] 132.5 0.3367003
[10,] 137.5 0.3367003
[11,] 142.5 0.6734007
[12,] 147.5 0.5050505
[13,] 152.5 0.8417508
[14,] 157.5 0.8417508
[15,] 162.5 0.3367003
[16,] 167.5 0.6734007
[17,] 172.5 1.0101010
[18,] 177.5 0.8417508
[19,] 182.5 1.1784512
[20,] 187.5 0.6734007
[21,] 192.5 1.3468013
[22,] 197.5 2.5252525
[23,] 202.5 3.0303030
[24,] 207.5 3.5353535
[25,] 212.5 4.2087542
[26,] 217.5 3.8720539
[27,] 222.5 3.0303030
[28,] 227.5 2.0202020
[29,] 232.5 1.0101010
[30,] 237.5 0.1683502
[31,] 242.5 1.1784512
[32,] 247.5 0.8417508
[33,] 252.5 0.6734007
[34,] 262.5 0.3367003
[35,] 272.5 0.5050505
[36,] 277.5 0.1683502
[37,] 282.5 0.1683502
[38,] 287.5 0.1683502
[39,] 292.5 0.1683502
[40,] 307.5 0.1683502
[41,] 312.5 0.1683502
[42,] 327.5 0.1683502
[43,] 332.5 0.5050505
[44,] 337.5 0.1683502
[45,] 342.5 0.6734007
[46,] 347.5 0.6734007
[47,] 352.5 0.3367003
[48,] 362.5 0.5050505
[49,] 367.5 0.5050505
[50,] 372.5 0.1683502
[51,] 377.5 0.6734007
[52,] 382.5 0.8417508
[53,] 387.5 1.1784512
[54,] 392.5 1.3468013
[55,] 397.5 1.5151515
[56,] 402.5 1.5151515
[57,] 407.5 0.8417508
[58,] 412.5 1.0101010
[59,] 417.5 0.5050505
[60,] 422.5 0.5050505
[61,] 427.5 0.8417508
[62,] 432.5 0.5050505
[63,] 437.5 0.6734007
[64,] 442.5 1.6835017
[65,] 447.5 1.1784512
       [,1]      [,2]
 [1,]  92.5 1.3468013
 [2,]  97.5 1.1784512
 [3,] 102.5 1.0101010
 [4,] 107.5 1.6835017
 [5,] 112.5 0.6734007
 [6,] 117.5 0.5050505
 [7,] 122.5 0.1683502
 [8,] 127.5 0.1683502
 [9,] 132.5 0.1683502
[10,] 137.5 0.5050505
[11,] 142.5 0.1683502
[12,] 147.5 0.1683502
[13,] 152.5 0.8417508
[14,] 157.5 0.8417508
[15,] 162.5 0.1683502
[16,] 167.5 0.8417508
[17,] 172.5 0.5050505
[18,] 177.5 0.5050505
[19,] 182.5 0.1683502
[20,] 187.5 0.1683502
[21,] 192.5 0.5050505
[22,] 197.5 0.3367003
[23,] 202.5 1.3468013
[24,] 207.5 2.1885522
[25,] 212.5 3.0303030
[26,] 217.5 1.5151515
[27,] 222.5 0.8417508
[28,] 227.5 1.6835017
[29,] 232.5 0.3367003
[30,] 237.5 0.6734007
[31,] 242.5 0.3367003
[32,] 257.5 0.1683502
[33,] 287.5 0.1683502
[34,] 327.5 0.3367003
[35,] 332.5 0.1683502
[36,] 342.5 0.5050505
[37,] 347.5 0.1683502
[38,] 352.5 0.1683502
[39,] 357.5 0.3367003
[40,] 367.5 0.1683502
[41,] 372.5 0.0000000
[42,] 377.5 0.1683502
[43,] 382.5 0.3367003
[44,] 387.5 1.0101010
[45,] 392.5 0.6734007
[46,] 397.5 0.5050505
[47,] 402.5 0.1683502
[48,] 417.5 0.1683502
[49,] 427.5 0.5050505
[50,] 432.5 0.1683502
[51,] 437.5 0.3367003
[52,] 442.5 0.6734007
[53,] 447.5 0.6734007
       [,1]      [,2]
 [1,] 102.5 0.3367003
 [2,] 107.5 0.0000000
 [3,] 112.5 0.1683502
 [4,] 117.5 0.1683502
 [5,] 122.5 0.1683502
 [6,] 132.5 0.1683502
 [7,] 137.5 0.3367003
 [8,] 182.5 0.1683502
 [9,] 187.5 0.1683502
[10,] 197.5 0.1683502
[11,] 212.5 0.3367003
[12,] 217.5 0.5050505
[13,] 222.5 0.3367003
[14,] 227.5 0.6734007
[15,] 232.5 0.3367003
[16,] 237.5 0.5050505
[17,] 242.5 0.1683502
[18,] 247.5 0.1683502
[19,] 427.5 0.3367003
[20,] 437.5 0.1683502
      [,1]      [,2]
[1,] 107.5 0.1683502
[2,] 117.5 0.1683502
[3,] 132.5 0.0000000
[4,] 422.5 0.5050505
[5,] 427.5 0.1683502
[6,] 432.5 0.1683502
[1] "making cruise html"
[1] "2017-04-07 13:41:23 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"