[1] "2025-04-29 23:54:32 MDT" [1] "1504" "150510" "d130" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150510a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:54:36 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.829, ave o2scale2 = 0.745" [1] "Removing 2 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "107 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.829, ave o2scale2 = 0.745" [1] "Removing 2 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "107 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:54:37 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:54:37 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:55:00 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:55:01 MDT" [1] "reading in recalculated plot titles" [1] "Removed 107 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1329 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:55:04 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478.2" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.957 co2off = 422.15 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.51 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 8 [4,] 9 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 106 115 0.07409722 0.08035642 0.07792185 3 -35.705234 398.4718 3 4 116 125 0.08105182 0.08731481 0.08487765 3 -6.851055 250.5368 4 3 126 135 0.08801039 0.09426968 0.09322627 3 -18.272836 361.6739 6 4 385 394 0.28278099 0.28904034 0.28660600 2 -6.869352 253.6253 7 2 395 404 0.28973576 0.29599537 0.29356088 2 -35.724609 402.4952 8 5 405 414 0.29669089 0.30295023 0.30190685 NA -17.516000 312.1455 10 2 666 675 0.49145883 0.49771875 0.49528413 2 -35.740609 394.4812 11 4 676 683 0.49841432 0.50328249 0.50154363 2 -6.898125 244.5111 13 4 923 931 0.70012769 0.70638770 0.70380415 2 -6.949923 248.5738 14 2 932 941 0.70708316 0.71334300 0.71090834 2 -35.827078 399.8892 16 2 1213 1222 0.90881655 0.91507598 0.91264159 2 -35.863078 401.5434 17 4 1223 1229 0.91577138 0.92064401 0.91925256 2 -7.007535 257.9995 18 5 1230 1235 0.92273032 0.92829404 0.92968503 NA -18.261047 317.9698 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.209474 1.346421 -3.977364e-03 1.3384870 0.0101191424 6.4376722 3 1.209477 1.346376 2.411002e-03 -0.5263946 0.0076141930 5.5330198 4 1.209810 1.346751 6.277285e-04 7.0701693 0.0025625953 9.4979574 6 1.209043 1.345719 -2.191701e-04 0.7134986 0.0037223591 4.5369982 7 1.209102 1.345810 2.232801e-05 1.0373990 0.0037166298 3.1434918 8 1.209055 1.345726 4.992304e-04 0.3384063 0.0003535534 0.4976091 10 1.208125 1.343670 -2.745448e-03 1.1593577 0.0072158795 7.6935623 11 1.207968 1.343409 2.203721e-03 -7.7343431 0.0046972399 15.0750730 13 1.205123 1.338157 -1.120634e-03 -0.2434448 0.0044473828 5.6602836 14 1.204984 1.338046 -2.933810e-03 -2.3508220 0.0087032392 7.2511706 16 1.201447 1.334571 -5.527572e-04 0.5616699 0.0030371123 3.6532567 17 1.201464 1.334573 2.942653e-03 2.4254137 0.0053323146 6.7536764 18 1.200898 1.333564 -1.399114e-01 6.5401342 0.3889693291 18.5262331 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 410.861 co2l1 = 0.957 co2l0 = 0.02" [1] "co2l0 = -167.46 co2l1 = 0.213" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "0 out of 0 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1151 1-min values rejected as stack air" [1] "0 out of 1151 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"