[1] "2025-04-29 23:53:25 MDT" [1] "1504" "150508" "d128" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150508a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:53:29 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.827, ave o2scale2 = 0.744" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "3 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.827, ave o2scale2 = 0.744" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "3 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:53:29 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:53:29 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:53:51 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:53:53 MDT" [1] "reading in recalculated plot titles" [1] "Removed 3 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1433 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:53:59 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478.2" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.958 co2off = 410.81 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 12 [5,] 13 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 198 207 0.1383359 0.1445991 0.1421645 2 -6.864039 251.7674 3 2 208 217 0.1452950 0.1515574 0.1491233 2 -35.720187 397.3133 4 5 218 227 0.1522528 0.1585123 0.1574692 NA -17.702500 315.4634 6 2 498 507 0.3470444 0.3533041 0.3508698 3 -35.708047 394.4702 7 4 508 517 0.3539995 0.3602593 0.3578247 3 -6.862625 251.6424 8 3 518 527 0.3609549 0.3672147 0.3661710 3 -18.278828 337.6653 10 4 798 807 0.5557293 0.5619885 0.5595545 2 -6.807875 250.5524 11 2 808 817 0.5626841 0.5689438 0.5665097 2 -35.670461 393.2609 13 2 1095 1104 0.7644074 0.7706671 0.7682329 3 -35.678844 395.9669 14 4 1105 1114 0.7713624 0.7776251 0.7751897 3 -6.833250 250.5511 15 5 1115 1124 0.7783207 0.7845835 0.7835406 NA -17.655906 309.0128 16 3 1125 1134 0.7852791 0.7915383 0.7904954 3 -18.251148 346.2912 18 4 1395 1404 0.9731253 0.9793850 0.9769506 2 -6.823484 253.0430 19 2 1405 1414 0.9800804 0.9863398 0.9839054 2 -35.674672 397.6898 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.206992 1.342451 -0.0004529195 0.01750482 0.003936428 2.2187828 3 1.207123 1.342601 -0.0023891472 1.32421997 0.007806462 4.1848111 4 1.207180 1.342663 -0.0024968789 0.61440527 0.001767767 0.8853421 6 1.208847 1.344386 -0.0049504043 -0.48256127 0.012667351 2.2896410 7 1.208738 1.344253 0.0022878580 -1.25436022 0.007212882 3.8684637 8 1.208553 1.344012 0.0003802229 -2.23265601 0.004349640 3.0977616 10 1.210458 1.346091 0.0002051366 0.53212143 0.003579455 2.6132612 11 1.210571 1.346209 -0.0012459456 -1.71963662 0.005358981 5.3660385 13 1.211312 1.347000 -0.0011737657 -1.21776098 0.003411672 3.3365259 14 1.211098 1.346769 0.0020423815 1.22278367 0.005686568 3.3361901 15 1.211054 1.346726 -0.0029341990 2.10079500 0.002077126 3.6812346 16 1.210947 1.346592 0.0025818873 -1.41398437 0.007199093 4.8457966 18 1.210675 1.346312 0.0003208888 -0.92212094 0.003937819 2.5779385 19 1.210813 1.346482 -0.0043267825 0.21779784 0.010789729 1.1195125 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 410.787 co2l1 = 0.957 co2l0 = 0.02" [1] "co2l0 = -169.31 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "10 out of 10 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1241 1-min values rejected as stack air" [1] "0 out of 1241 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"