[1] "2025-04-29 23:52:49 MDT" [1] "1504" "150507" "d127" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150507a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85140 63 [1] 85140 [1] 85140 [1] "testing skipping spike filter" [1] 85140 [1] 85140 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:52:53 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.835, ave o2scale2 = 0.751" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "1 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.835, ave o2scale2 = 0.751" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "1 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:52:54 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:52:54 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:53:15 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:53:17 MDT" [1] "reading in recalculated plot titles" [1] "Removed 1 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1417 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:53:20 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478.2" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.958 co2off = 410.93 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.01 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 136 145 0.0947987 0.1010579 0.09862389 3 -35.874508 394.4444 3 4 146 155 0.1017535 0.1080127 0.10557875 3 -6.996227 249.7815 4 3 156 165 0.1087083 0.1149676 0.11392423 3 -18.413695 339.1496 6 4 418 427 0.3035556 0.3098155 0.30738109 2 -6.998000 248.9399 7 2 428 437 0.3105109 0.3167701 0.31433602 2 -35.845336 397.2475 9 2 718 727 0.5122463 0.5185058 0.51607165 3 -35.842359 394.4281 10 4 728 737 0.5192050 0.5254692 0.52303152 3 -6.984172 251.9327 11 5 738 747 0.5261644 0.5324243 0.53138083 NA -17.709031 314.9420 12 3 748 757 0.5331197 0.5393790 0.53833588 3 -18.406000 341.0540 14 4 1018 1027 0.7209476 0.7272072 0.72477296 2 -6.948352 244.7834 15 2 1028 1037 0.7279028 0.7341626 0.73172819 2 -35.809352 394.9222 19 2 1317 1326 0.9296541 0.9359132 0.93347940 3 -35.775305 395.2331 20 4 1327 1336 0.9366088 0.9428682 0.94043425 3 -6.916945 248.7325 21 3 1337 1346 0.9435637 0.9498266 0.94878368 3 -18.334969 340.8959 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.193760 1.327645 0.0002905235 -0.12325970 0.001221751 1.546067 3 1.193823 1.327716 0.0011301494 0.38181182 0.004810463 2.415875 4 1.194167 1.328098 0.0028952784 0.54753542 0.007835248 1.524107 6 1.196195 1.330448 0.0011975540 -0.71485696 0.003019653 3.529028 7 1.196371 1.330657 -0.0012399305 -0.05690488 0.005477015 1.795551 9 1.197235 1.331694 0.0001233545 -0.05114690 0.001636549 1.574226 10 1.197101 1.331551 0.0019184462 1.21253411 0.005304011 3.386864 11 1.197352 1.331835 -0.0049282595 0.70633898 0.003491340 1.162306 12 1.197100 1.331560 0.0015171142 2.75201737 0.006282771 3.582864 14 1.198927 1.333599 0.0001996599 0.99738857 0.002894911 2.566622 15 1.199426 1.334141 -0.0015504384 0.05107213 0.006267025 1.771918 19 1.203995 1.339123 -0.0021746871 0.73228831 0.005585320 2.848923 20 1.203917 1.339034 0.0022371121 0.58674998 0.007212065 1.863227 21 1.203791 1.338900 0.0029659875 0.89263169 0.007634070 1.652732 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 410.907 co2l1 = 0.957 co2l0 = 0.028" [1] "co2l0 = -167.94 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "53 out of 210 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "157 out of 1231 1-min values rejected as stack air" [1] "116 out of 1173 Line 1 1-min values rejected as stack air" [1] "41 out of 58 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"