[1] "2025-04-29 23:55:15 MDT" [1] "1504" "150506" "d126" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150506a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85200 63 [1] 85200 [1] 85200 [1] "testing skipping spike filter" [1] 85200 [1] 85200 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:55:19 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.839, ave o2scale2 = 0.755" [1] "Removing 5 MR FC 1 jog(s) with WT SD > 50" [1] "Removing 3 MR FC 2 jog(s) with WT SD > 50" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "24 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.839, ave o2scale2 = 0.755" [1] "Removing 5 RC FC 1 jog(s) with WT SD > 50" [1] "Removing 3 RC FC 2 jog(s) with WT SD > 50" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "23 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:55:19 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:55:19 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:55:41 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:55:42 MDT" [1] "reading in recalculated plot titles" [1] "Removed 23 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 1 row(s) with LiCO2A spikes in them" [1] "TEMP: 1395 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:55:45 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478.2" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.957 co2off = 415.74 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.58 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 74 83 0.05171149 0.05797106 0.05553649 2 -7.137453 244.8582 3 2 84 93 0.05866664 0.06492593 0.06249158 2 -36.022086 389.3041 5 2 350 358 0.26004644 0.26561036 0.26352407 3 -35.974938 391.2535 6 4 359 367 0.26630576 0.27187002 0.26978350 3 -7.099937 247.5523 8 3 377 385 0.27882523 0.28438924 0.28369353 3 -18.527813 332.7869 10 4 649 656 0.47011806 0.47498707 0.47324780 2 -7.041719 251.3227 11 2 657 666 0.47568258 0.48194193 0.47950760 2 -35.905219 391.4700 13 2 944 953 0.67742743 0.68368663 0.68125263 3 -35.914219 394.3432 14 4 954 963 0.68438212 0.69064285 0.68820807 3 -7.056578 249.3009 15 3 964 973 0.69134149 0.69760081 0.69655768 3 -18.478828 337.0097 17 4 1243 1252 0.88612086 0.89237972 0.88994582 2 -7.023187 246.2770 18 2 1253 1262 0.89307529 0.89933449 0.89690061 2 -35.895773 394.5747 19 5 1263 1272 0.90003012 0.90629282 0.90524953 NA -17.888781 305.9038 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.186209 1.318706 -0.0001054902 0.759964873 0.0015384760 2.7802372 3 1.186484 1.319017 -0.0026544309 -0.175448812 0.0070618234 1.7480098 5 1.190412 1.323738 -0.0014688522 1.107035551 0.0037819817 3.1936537 6 1.190454 1.323665 0.0035903841 -0.499034122 0.0099236670 1.8820196 8 1.190919 1.324054 0.0070098590 -0.025727939 0.0164019340 0.3710663 10 1.192493 1.325812 0.0028364648 0.660228194 0.0053515112 3.2416002 11 1.192589 1.326020 -0.0012836067 -0.321229300 0.0067018787 2.5411317 13 1.193419 1.327208 -0.0004295052 0.212638060 0.0034684483 1.9922886 14 1.193218 1.327001 0.0010473562 0.733445288 0.0050205771 2.8361915 15 1.193178 1.326957 0.0023017428 1.033480272 0.0063403954 1.4600259 17 1.193063 1.326854 0.0021740822 0.140488000 0.0065327130 2.2518765 18 1.193106 1.326898 -0.0055183403 0.006484408 0.0140088436 1.2406888 19 1.192973 1.326755 -0.0009359401 -1.194463748 0.0006629126 1.5482280 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 411.006 co2l1 = 0.956 co2l0 = 0.02" [1] "co2l0 = -168.49 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "54 out of 69 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "15 out of 1209 1-min values rejected as stack air" [1] "15 out of 1209 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"