[1] "2025-04-29 23:51:39 MDT" [1] "1504" "150505" "d125" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150505a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85140 63 [1] 85140 [1] 85140 [1] "testing skipping spike filter" [1] 85140 [1] 85140 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:51:43 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.846, ave o2scale2 = 0.761" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "7 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.846, ave o2scale2 = 0.761" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "9 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:51:43 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:51:43 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:52:06 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:52:07 MDT" [1] "reading in recalculated plot titles" [1] "Removed 9 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 103 row(s) with high TFRIDGE" [1] "TEMP: 1306 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:52:10 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478.2" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.957 co2off = 411.21 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.88 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [5,] 13 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 10 19 0.00863831 0.01490162 0.01246442 3 -36.141078 385.2018 3 4 20 29 0.01559728 0.02186345 0.01942930 3 -7.266398 241.3104 4 5 30 39 0.02256013 0.02882049 0.02777719 NA -18.079750 298.8913 5 3 40 49 0.02951626 0.03577720 0.03473414 3 -18.691508 336.2199 7 4 290 298 0.21697917 0.22254308 0.22045692 2 -7.197491 242.0981 8 2 299 307 0.22323845 0.22880289 0.22671612 2 -36.069321 383.2444 10 2 590 599 0.42567240 0.43193420 0.42950017 3 -36.056625 388.6325 11 4 600 609 0.43263345 0.43889251 0.43645848 3 -7.178055 244.6306 12 3 610 619 0.43958799 0.44584722 0.44480395 3 -18.598703 334.6140 14 4 781 790 0.63436398 0.64062381 0.63818940 2 -7.199867 244.9281 15 2 791 800 0.64131924 0.64757870 0.64514431 2 -36.098992 387.5777 16 5 801 810 0.64827431 0.65453704 0.65349364 NA -18.093812 302.4483 18 2 1081 1090 0.84304271 0.84930208 0.84686760 3 -36.110367 388.6442 19 4 1091 1100 0.84999760 0.85625694 0.85382246 3 -7.226328 240.4446 20 3 1101 1110 0.85695255 0.86321149 0.86216831 3 -18.646234 335.6890 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.178616 1.309299 -0.0003496219 0.3634975 0.003686478 1.5439100 3 1.178671 1.309363 0.0013338597 1.1566581 0.005292867 4.0806483 4 1.179123 1.309872 -0.0034947579 -0.9640574 0.002474874 1.9348931 5 1.179208 1.309979 0.0014657459 2.0622316 0.004434221 2.6936337 7 1.182724 1.314233 0.0012169609 -1.1777796 0.002837947 3.9483066 8 1.183015 1.314475 -0.0024203154 1.0886382 0.006287329 5.1299909 10 1.184092 1.315917 -0.0005498525 0.3929332 0.003406107 2.9200757 11 1.183904 1.315733 0.0026488728 0.2954586 0.007657020 1.7061733 12 1.183908 1.315767 0.0019066821 -0.8905037 0.006900015 1.4244058 14 1.182143 1.313799 -0.0008504719 -0.5301736 0.003973607 2.1712354 15 1.181983 1.313643 -0.0034713832 0.0487620 0.009525544 3.4871993 16 1.181924 1.313581 -0.0023710483 -0.1336486 0.001679379 0.5640115 18 1.180781 1.312457 -0.0006960442 0.4688666 0.002222912 1.3605631 19 1.180925 1.312614 0.0047812783 -0.9129647 0.011861070 3.1532617 20 1.181259 1.312996 0.0029345916 -3.8607141 0.007588301 5.1418453 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 411.136 co2l1 = 0.956 co2l0 = 0.035" [1] "co2l0 = -167.48 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "61 out of 75 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "14 out of 1097 1-min values rejected as stack air" [1] "7 out of 979 Line 1 1-min values rejected as stack air" [1] "7 out of 118 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"