[1] "2025-04-29 23:50:23 MDT" [1] "1504" "150503" "d123" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150503a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:50:27 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.861, ave o2scale2 = 0.775" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "20 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.861, ave o2scale2 = 0.775" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "20 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:50:28 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:50:28 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:50:49 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:50:51 MDT" [1] "reading in recalculated plot titles" [1] "Removed 20 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1414 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:50:56 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478.2" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.956 co2off = 411.43 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.03 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.06 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 185 194 0.1294317 0.1356922 0.1332572 2 -7.436898 242.0494 3 2 195 204 0.1363877 0.1426471 0.1402132 2 -36.352242 390.2291 6 2 475 484 0.3382570 0.3445200 0.3420842 3 -36.367875 387.9106 7 4 485 494 0.3452165 0.3514838 0.3490470 3 -7.456617 242.6983 8 3 495 504 0.3521803 0.3584434 0.3573999 3 -18.884734 334.2075 10 4 775 784 0.5471839 0.5534502 0.5510121 2 -7.425859 241.0203 11 2 785 794 0.5541465 0.5604146 0.5579788 2 -36.326539 384.3863 13 2 1070 1079 0.7561204 0.7623935 0.7599545 3 -36.364414 376.5093 14 4 1080 1089 0.7630902 0.7693830 0.7669348 3 -7.448914 237.7835 15 5 1090 1099 0.7700827 0.7763471 0.7753028 NA -18.191656 297.2652 16 3 1100 1109 0.7770440 0.7833110 0.7822672 3 -18.900758 326.7572 18 4 1368 1377 0.9651620 0.9714317 0.9689916 2 -7.456977 237.6545 19 2 1378 1387 0.9721284 0.9783959 0.9759595 2 -36.372984 376.3431 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.160210 1.288660 -0.0010823103 -0.79555765 0.003101508 3.498954 3 1.160233 1.288724 0.0002949226 -0.47865760 0.004129791 2.400607 6 1.160782 1.289301 -0.0008701063 0.48258508 0.005349712 3.404223 7 1.160675 1.289173 -0.0003063893 -0.73919362 0.003118285 2.173929 8 1.161408 1.289976 0.0026406026 0.12685180 0.009029265 1.828075 10 1.163604 1.292324 -0.0001600823 0.05187416 0.001724544 3.584056 11 1.163295 1.291999 -0.0032735930 1.50316430 0.009073419 3.993579 13 1.161765 1.290320 -0.0004884872 2.81918586 0.001739104 10.202442 14 1.161340 1.289867 0.0012388905 0.12906544 0.005089592 3.350243 15 1.161193 1.289718 -0.0044238598 0.54270755 0.003137786 2.591116 16 1.161270 1.289834 0.0020634338 1.68231946 0.005846286 3.145041 18 1.161907 1.290438 -0.0022221267 0.19029112 0.005960429 3.929322 19 1.161880 1.290413 -0.0036356199 2.52624304 0.009994795 14.753231 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 411.352 co2l1 = 0.955 co2l0 = 0.03" [1] "co2l0 = -167.38 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "64 out of 198 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "134 out of 1223 1-min values rejected as stack air" [1] "134 out of 1223 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"