[1] "2025-04-29 23:49:55 MDT" [1] "1504" "150502" "d122" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150502a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85447 63 [1] 85447 [1] 85447 [1] "testing skipping spike filter" [1] 85447 [1] 85447 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:49:59 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.856, ave o2scale2 = 0.771" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "11 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.856, ave o2scale2 = 0.771" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "11 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:50:00 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:50:00 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:50:13 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:50:15 MDT" [1] "reading in recalculated plot titles" [1] "Removed 11 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 6 row(s) with variable TFCELL" [1] "TEMP: 1406 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:50:18 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478.2" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.062 co2off = 411.9 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.64 minutes" [1] "Shortest Cal: 3 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 9 [5,] 11 12 [6,] 13 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 79 88 0.05524265 0.06150194 0.05906755 2 -4.167156 120.8279 3 2 89 98 0.06219722 0.06845613 0.06602223 2 -33.146516 267.5742 5 2 379 388 0.26399008 0.27024942 0.26781524 3 -33.235141 270.7211 6 4 389 398 0.27094476 0.27720434 0.27477019 3 -4.241422 122.8160 7 3 399 408 0.27789983 0.28415966 0.28311631 3 -15.714352 215.0308 11 4 679 688 0.47267245 0.47893183 0.47649759 2 -4.265086 121.6863 12 2 689 698 0.47962752 0.48588678 0.48345277 2 -33.266977 268.5474 14 2 703 712 0.51012587 0.51638542 0.51395122 2 -36.252586 395.9145 15 4 713 722 0.51708102 0.52334109 0.52090664 2 -7.349352 250.7150 16 5 723 732 0.52403646 0.53029630 0.52925300 NA -18.846625 316.5856 18 4 993 1002 0.71185385 0.71811690 0.71568059 2 -7.369141 260.3939 19 2 1003 1012 0.71881250 0.72507575 0.72264034 2 -36.280055 402.7991 21 2 1293 1302 0.92055926 0.92681942 0.92438466 3 -36.332953 398.1196 22 4 1303 1312 0.92751496 0.93377778 0.93134158 3 -7.423320 256.0398 23 3 1313 1322 0.93447338 0.94073278 0.93968956 3 -18.866328 342.8099 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.174695 1.304510 0.0006166234 0.46515170 0.0021247374 3.469634 3 1.174797 1.304638 -0.0001932941 0.60483371 0.0048260766 1.712545 5 1.171512 1.301124 -0.0004665556 1.12429574 0.0017887140 3.922812 6 1.171289 1.300893 0.0024115007 -1.64864242 0.0083969429 4.782902 7 1.171119 1.300707 0.0018831187 1.60481635 0.0046655961 3.199573 11 1.168533 1.297887 -0.0008344044 -0.15444042 0.0042661115 1.978557 12 1.168527 1.297893 -0.0018775814 -0.17439959 0.0072015730 3.587347 14 1.167569 1.296604 -0.0017079628 2.34328361 0.0044114474 9.322272 15 1.167677 1.296811 0.0010036127 -1.22801606 0.0029320690 14.102759 16 1.167605 1.296834 -0.0009991674 2.46377059 0.0007071068 6.265212 18 1.164957 1.293932 -0.0008206367 -0.48251983 0.0033118682 3.018119 19 1.164812 1.293778 0.0012137580 0.03156066 0.0047089909 1.364081 21 1.160927 1.289448 0.0005379550 1.15770129 0.0052728827 4.330100 22 1.160832 1.289341 0.0016876935 0.93070122 0.0061433251 3.400505 23 1.160879 1.289437 0.0032997043 1.37337276 0.0091575831 3.037423 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 409.773 co2l1 = 0.954 co2l0 = 0.045" [1] "co2l0 = -155.16 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "50 out of 160 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "110 out of 1196 1-min values rejected as stack air" [1] "99 out of 1078 Line 1 1-min values rejected as stack air" [1] "11 out of 118 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"