[1] "2025-04-29 23:49:14 MDT" [1] "1504" "150501" "d121" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150501a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:49:18 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.848, ave o2scale2 = 0.764" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "4 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.848, ave o2scale2 = 0.764" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "4 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:49:18 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:49:18 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:49:39 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:49:41 MDT" [1] "reading in recalculated plot titles" [1] "Removed 4 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1432 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:49:50 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478.2" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.953 co2off = 408.24 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.01 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [5,] 12 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 16 25 0.01175234 0.01801204 0.01557764 3 -33.044414 270.3666 3 4 26 35 0.01870729 0.02496646 0.02253243 3 -4.063844 125.4806 4 3 36 45 0.02566204 0.03192135 0.03087798 3 -15.521289 213.9206 6 4 313 322 0.22049722 0.22675599 0.22432205 2 -4.111445 124.2381 7 2 323 332 0.22745153 0.23371114 0.23127701 2 -33.088531 272.0594 8 5 333 342 0.23440645 0.24066562 0.23962254 NA -14.983125 180.2657 12 2 612 621 0.42917789 0.43543733 0.43300297 3 -33.105508 268.2382 13 4 622 631 0.43613310 0.44239245 0.43995829 3 -4.121977 125.1651 14 3 632 641 0.44308805 0.44934722 0.44830392 3 -15.589320 217.5171 17 4 912 921 0.63786568 0.64412622 0.64169070 2 -4.112523 124.4536 18 2 922 931 0.64482187 0.65108229 0.64864746 2 -33.080367 267.6051 20 2 1212 1221 0.84655671 0.85281597 0.85038175 3 -33.108516 269.2364 21 4 1222 1231 0.85351146 0.85977083 0.85733667 3 -4.139492 120.8148 22 5 1232 1241 0.86046646 0.86672917 0.86568607 NA -15.007906 184.7861 23 3 1242 1251 0.86742506 0.87368819 0.87264508 3 -15.604062 212.1549 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.182345 1.313348 -0.0008698471 1.7227836 0.003733735 6.997001 3 1.182336 1.313312 0.0021681772 1.5555044 0.007458666 4.401068 4 1.182366 1.313332 0.0043203380 0.3902182 0.011239129 1.162850 6 1.180744 1.311128 -0.0020468102 -0.1428209 0.005469216 1.967932 7 1.180816 1.311243 -0.0030074085 0.2789212 0.007766974 1.677624 8 1.180552 1.310977 -0.0037448508 -3.0276489 0.002651650 4.020055 12 1.180164 1.310550 0.0008699287 -0.6754412 0.002386354 2.236612 13 1.180044 1.310422 0.0040454820 0.2480359 0.010247437 1.469444 14 1.180185 1.310636 0.0014867333 -0.3872233 0.004254257 2.618118 17 1.178486 1.308716 0.0022957225 1.2630523 0.005849864 3.874224 18 1.178718 1.308978 -0.0015206429 -0.3834596 0.004532920 1.819311 20 1.176508 1.306565 0.0010475703 1.3867069 0.003864293 3.650058 21 1.176357 1.306389 0.0003678962 0.9760637 0.002941665 2.608853 22 1.176433 1.306444 -0.0059286071 1.0713506 0.004198447 1.795952 23 1.176400 1.306400 -0.0003604346 0.3319261 0.002139916 1.030828 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 408.156 co2l1 = 0.953 co2l0 = 0.021" [1] "co2l0 = -140.91 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "88 out of 365 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "277 out of 1219 1-min values rejected as stack air" [1] "191 out of 1042 Line 1 1-min values rejected as stack air" [1] "86 out of 177 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"