[1] "2025-04-29 23:48:48 MDT" [1] "1504" "150430" "d120" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150430a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85200 63 [1] 85200 [1] 85200 [1] "testing skipping spike filter" [1] 85200 [1] 85200 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:48:52 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.847, ave o2scale2 = 0.762" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 2 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "29 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.847, ave o2scale2 = 0.763" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "29 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:48:52 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:48:52 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:49:05 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:49:06 MDT" [1] "reading in recalculated plot titles" [1] "Removed 29 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1390 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:49:09 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.953 co2off = 400.34 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.6 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 13.41 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 252 261 0.1770669 0.1863795 0.1828318 3 -33.044516 276.7043 3 4 262 271 0.1884303 0.1973755 0.1936563 3 -4.067438 117.3259 4 3 272 279 0.1981435 0.2044894 0.2039846 3 -15.521250 210.3652 6 4 527 536 0.3856341 0.3918937 0.3894592 2 -4.068789 123.5943 7 2 537 546 0.3925891 0.3988484 0.3964144 2 -33.049086 268.9717 9 2 827 836 0.5943264 0.6005896 0.5981555 3 -32.994617 265.2497 10 4 837 846 0.6012851 0.6075532 0.6051136 3 -4.014672 126.2624 11 5 847 856 0.6082484 0.6145081 0.6134647 NA -14.883031 182.9213 12 3 857 866 0.6152037 0.6214630 0.6204196 3 -15.466516 214.6077 14 4 1111 1120 0.8030251 0.8092847 0.8068503 2 -4.028281 124.6163 15 2 1121 1128 0.8099800 0.8148484 0.8131095 2 -32.999552 266.7185 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.178339 1.308117 -0.0004223018 -3.38511807 0.004900887 14.924749 3 1.178310 1.308132 -0.0009182594 0.39099164 0.003852904 11.515270 4 1.178402 1.308230 -0.0003374569 -4.72849323 0.002377302 4.860685 6 1.179045 1.309902 -0.0015681566 -0.38557684 0.004721949 8.484489 7 1.179322 1.310164 -0.0005951767 -0.76331559 0.006820559 3.734521 9 1.182503 1.313711 0.0015518616 -0.01838487 0.005658771 3.014168 10 1.182318 1.313475 0.0030974589 -0.16054519 0.008186495 2.269343 11 1.182545 1.313737 -0.0019337936 0.23059066 0.001370019 1.694116 12 1.182627 1.313821 0.0028587180 3.54671678 0.007235573 5.120162 14 1.183363 1.314694 0.0015808628 -0.35591980 0.004617755 3.724331 15 1.183307 1.314611 -0.0008218481 -2.62042206 0.003341130 5.059531 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 408.093 co2l1 = 0.953 co2l0 = 0.031" [1] "co2l0 = -140.55 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "54 out of 75 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "21 out of 1252 1-min values rejected as stack air" [1] "21 out of 1252 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"