[1] "2025-04-29 23:48:12 MDT" [1] "1504" "150429" "d119" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150429a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85140 63 [1] 85140 [1] 85140 [1] "testing skipping spike filter" [1] 85140 [1] 85140 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:48:16 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.852, ave o2scale2 = 0.768" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "42 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.852, ave o2scale2 = 0.768" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "42 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:48:16 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:48:16 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:48:38 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:48:40 MDT" [1] "reading in recalculated plot titles" [1] "Removed 43 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1375 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:48:43 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.954 co2off = 403.2 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.59 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 182 191 0.1322929 0.1385527 0.1361183 2 -4.139703 123.3938 3 2 192 196 0.1392480 0.1420301 0.1413345 2 -33.124750 270.3687 5 2 440 449 0.3412304 0.3474903 0.3450561 3 -33.118234 271.0854 6 4 450 459 0.3481858 0.3544451 0.3520109 3 -4.131195 119.7811 7 5 460 469 0.3551410 0.3614005 0.3603571 NA -14.916031 185.0673 8 3 470 478 0.3620959 0.3683553 0.3676597 3 -15.588482 218.3206 10 4 732 739 0.5499217 0.5554896 0.5536342 2 -4.171687 122.4765 11 2 740 749 0.5568807 0.5631433 0.5607090 2 -33.147867 270.8786 13 2 1029 1038 0.7586632 0.7649223 0.7624880 3 -33.097313 268.1234 14 4 1039 1048 0.7656177 0.7718765 0.7694425 3 -4.109266 123.6845 15 3 1049 1058 0.7725729 0.7788316 0.7777885 3 -15.587133 213.1724 17 4 1329 1338 0.9673403 0.9735997 0.9711658 2 -4.054141 123.8369 18 2 1339 1348 0.9742952 0.9805546 0.9781207 2 -33.044187 267.7306 19 5 1349 1358 0.9812501 0.9875098 0.9864666 NA -14.938656 187.2184 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.172317 1.301171 -0.0018319987 0.39727318 0.004969971 1.2307771 3 1.172219 1.300963 -0.0074562566 -0.43976068 0.007962559 0.4463911 5 1.172213 1.301132 -0.0008617614 -0.74758868 0.002993809 2.4405319 6 1.172242 1.301166 0.0019530614 0.32532588 0.005543803 1.9027121 7 1.172329 1.301267 -0.0039309484 0.03388547 0.002784233 2.8984877 8 1.172363 1.301417 0.0041743138 1.01034844 0.009269604 1.1674596 10 1.171560 1.300474 0.0023884882 1.32559728 0.005309032 4.0537484 11 1.171700 1.300679 -0.0020971356 0.52890456 0.008088340 2.8196107 13 1.174741 1.304047 -0.0019820823 0.06254340 0.004919213 2.5771033 14 1.174886 1.304192 0.0012569930 -0.70465954 0.006321444 3.3825234 15 1.175089 1.304413 0.0030617053 3.22271480 0.008092892 4.3304237 17 1.177050 1.306604 -0.0013089315 0.15475187 0.005443987 1.7976678 18 1.177209 1.306773 -0.0039540066 -1.30886461 0.011645911 3.6017250 19 1.177144 1.306718 -0.0029337106 -1.21804334 0.002077126 1.8223130 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 408.167 co2l1 = 0.953 co2l0 = 0.02" [1] "co2l0 = -140.37 co2l1 = 0.217" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "0 out of 0 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1194 1-min values rejected as stack air" [1] "0 out of 1194 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"