[1] "2025-04-29 23:47:00 MDT" [1] "1504" "150427" "d117" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150427a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85140 63 [1] 85140 [1] 85140 [1] "testing skipping spike filter" [1] 85140 [1] 85140 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:47:04 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.833, ave o2scale2 = 0.75" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "6 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.833, ave o2scale2 = 0.75" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "8 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:47:05 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:47:05 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:47:27 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:47:29 MDT" [1] "reading in recalculated plot titles" [1] "Removed 8 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1410 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:47:32 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.954 co2off = 407.93 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.78 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 64 73 0.04576045 0.05201973 0.04958563 2 -3.848992 123.2952 3 2 74 83 0.05271528 0.05897462 0.05654034 2 -32.804414 267.8656 5 2 344 352 0.25400231 0.25956687 0.25748006 3 -32.758313 267.0246 6 4 353 361 0.26026227 0.26582607 0.26373958 3 -3.804286 123.2925 7 3 362 370 0.26652156 0.27208565 0.27139011 3 -15.263339 219.0708 10 4 644 653 0.46267436 0.46893753 0.46650180 2 -3.784258 123.7320 11 2 654 663 0.46963310 0.47589586 0.47346145 2 -32.752094 268.8281 12 5 664 673 0.47659144 0.48285148 0.48180829 NA -14.683344 178.4301 16 2 938 947 0.67136936 0.67762920 0.67519498 3 -32.740211 267.4351 17 4 948 957 0.67832468 0.68458796 0.68215209 3 -3.792609 126.3051 18 3 958 967 0.68528354 0.69154297 0.69049953 3 -15.234047 214.6598 21 4 1238 1247 0.88004977 0.88630961 0.88387550 2 -3.815555 122.9807 22 2 1248 1257 0.88700501 0.89326398 0.89083002 2 -32.770492 267.9269 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.197635 1.330277 0.0007912262 0.697441992 0.003390085 2.159388 3 1.197689 1.330350 -0.0009813489 -0.591986879 0.004924308 2.489498 5 1.200472 1.333562 -0.0016960994 -0.380997002 0.004758764 1.860651 6 1.200550 1.333572 0.0045998541 -0.054808388 0.010694494 3.458090 7 1.200553 1.333683 0.0026520909 4.280753672 0.006796987 4.349298 10 1.200560 1.333542 0.0007000411 0.171761374 0.002822193 2.780849 11 1.200562 1.333547 -0.0035689610 0.003132299 0.009875622 1.672982 12 1.200553 1.333410 -0.0045560456 1.919489377 0.003226175 5.720582 16 1.202150 1.335164 -0.0015251625 -0.517362599 0.004031812 4.469052 17 1.202208 1.335205 0.0026062116 0.037640269 0.007119261 2.381888 18 1.202437 1.335419 0.0013609755 1.288653905 0.004233391 1.709532 21 1.200818 1.333855 0.0008639903 2.687846069 0.002654477 9.846854 22 1.200781 1.333835 -0.0015760047 1.249139789 0.006215479 3.664993 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 407.873 co2l1 = 0.954 co2l0 = 0.021" [1] "co2l0 = -141.22 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "115 out of 235 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "120 out of 1221 1-min values rejected as stack air" [1] "95 out of 821 Line 1 1-min values rejected as stack air" [1] "25 out of 400 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"