[1] "2025-04-29 23:45:58 MDT" [1] "1504" "150425" "d115" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150425a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84898 63 [1] 84898 [1] 84898 [1] "testing skipping spike filter" [1] 84898 [1] 84898 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:46:02 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.848, ave o2scale2 = 0.763" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "80 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.848, ave o2scale2 = 0.763" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "80 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:46:02 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:46:02 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:46:16 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:46:18 MDT" [1] "reading in recalculated plot titles" [1] "Removed 80 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 10 row(s) with variable TFCELL" [1] "TEMP: 1322 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:46:20 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.954 co2off = 394.72 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.11 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 7 [4,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 245 254 0.1766233 0.1828863 0.1804509 2 -4.091195 121.6521 3 2 255 264 0.1835817 0.1898444 0.1874094 2 -33.072633 267.7689 4 5 265 274 0.1905398 0.1967990 0.1957558 NA -15.008750 182.1424 6 2 537 546 0.3853333 0.3915995 0.3891619 3 -33.000227 267.4656 7 4 547 556 0.3922953 0.3985614 0.3961234 3 -4.031961 124.7649 8 3 557 566 0.3992569 0.4055200 0.4044759 3 -15.499258 218.1015 11 4 779 786 0.6003148 0.6051840 0.6034450 1 -4.037583 125.5310 12 5 787 794 0.6058795 0.6121389 0.6117912 NA -15.058687 181.3285 14 4 1027 1036 0.7935313 0.7997904 0.7973561 2 -3.979312 123.9206 15 2 1037 1046 0.8004861 0.8067477 0.8043118 2 -32.952016 268.8858 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.174511 1.305752 0.0003673483 0.06524285 0.0026116663 1.971719 3 1.174639 1.305900 -0.0048192506 -0.31692230 0.0123511421 2.095329 4 1.174574 1.305845 -0.0012484395 1.69801520 0.0008838835 3.191099 6 1.178190 1.309923 -0.0025017138 -0.81627605 0.0068982511 2.617223 7 1.178279 1.310012 0.0006750733 0.09370585 0.0052284782 2.251630 8 1.178888 1.310677 0.0026929926 2.00606312 0.0072573421 2.640312 11 1.180014 1.312424 -0.0040897008 1.81693536 0.0079051671 4.965749 12 1.179466 1.311961 0.2627090440 -0.36538074 0.1860574718 0.258740 14 1.183206 1.316029 0.0004666313 0.20106448 0.0044813602 3.869444 15 1.183434 1.316269 -0.0029247878 -2.04471697 0.0087952751 7.562204 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 408.088 co2l1 = 0.953 co2l0 = 0.011" [1] "co2l0 = -141.08 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "50 out of 50 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1167 1-min values rejected as stack air" [1] "0 out of 1167 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"