[1] "2025-04-29 23:45:22 MDT" [1] "1504" "150424" "d114" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150424a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:45:26 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.851, ave o2scale2 = 0.765" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "95 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.851, ave o2scale2 = 0.765" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "95 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:45:26 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:45:26 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:45:48 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:45:50 MDT" [1] "reading in recalculated plot titles" [1] "Removed 95 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1341 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:45:53 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.953 co2off = 413.11 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 132 140 0.1330233 0.1392831 0.1370973 3 -33.214723 254.6372 3 4 141 148 0.1399782 0.1462377 0.1442670 3 -4.216000 141.7889 4 3 149 158 0.1469330 0.1531921 0.1521489 3 -15.685406 209.2676 6 4 424 433 0.3417280 0.3479908 0.3455563 2 -4.083531 128.9571 7 2 434 443 0.3486863 0.3549491 0.3525149 2 -33.054930 266.8595 9 2 721 730 0.5505162 0.5567755 0.5543412 3 -33.008578 269.4905 10 4 731 740 0.5574711 0.5637304 0.5612963 3 -4.016984 120.5021 11 5 741 750 0.5644259 0.5706855 0.5696422 NA -14.891031 183.8794 12 3 751 760 0.5713809 0.5776401 0.5765970 3 -15.493852 218.8353 14 4 1003 1012 0.7591956 0.7654587 0.7630244 2 -3.987477 122.4938 15 2 1013 1022 0.7661540 0.7724169 0.7699825 2 -32.977977 269.2597 17 2 1296 1305 0.9678751 0.9741348 0.9717007 3 -33.025773 269.4449 18 4 1306 1315 0.9748301 0.9810896 0.9786555 3 -4.032922 121.8959 19 3 1316 1325 0.9817848 0.9880447 0.9870013 3 -15.500836 212.7706 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.164341 1.297938 -0.0014529142 1.64326234 0.0050727593 9.726109 3 1.164756 1.298172 0.0021723725 -1.12932439 0.0053420502 22.609502 4 1.165594 1.299006 0.0024400611 -8.46312422 0.0062002484 11.855583 6 1.175482 1.307784 0.0007978591 0.53610882 0.0028234904 9.832977 7 1.175706 1.308029 -0.0029012974 0.01656427 0.0080705205 7.257612 9 1.179027 1.311392 0.0001500355 0.07636511 0.0024802231 2.474716 10 1.179159 1.311499 0.0024920204 -0.01027253 0.0068382745 1.706952 11 1.179406 1.311743 -0.0011859188 0.57369282 0.0008396893 1.101598 12 1.179446 1.311789 0.0010335751 2.72229994 0.0048324537 4.115363 14 1.180917 1.313120 -0.0003214232 0.93206611 0.0013316785 3.967860 15 1.181083 1.313304 -0.0040328615 0.13547517 0.0112159672 3.154744 17 1.178348 1.309718 0.0006173001 0.61083073 0.0033796161 1.693256 18 1.177917 1.309282 0.0004859279 0.45098189 0.0052104966 2.039643 19 1.177660 1.309066 0.0038561696 0.12008951 0.0107124519 1.749015 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 408.114 co2l1 = 0.952 co2l0 = 0.014" [1] "co2l0 = -143.4 co2l1 = 0.232" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "98 out of 230 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "132 out of 1162 1-min values rejected as stack air" [1] "132 out of 1162 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"