[1] "2025-04-29 23:44:42 MDT" [1] "1504" "150423" "d113" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150423a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:44:46 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.865, ave o2scale2 = 0.779" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "33 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.865, ave o2scale2 = 0.779" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "35 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:44:47 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:44:47 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:45:09 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:45:11 MDT" [1] "reading in recalculated plot titles" [1] "Removed 35 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1401 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:45:17 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.952 co2off = 408.4 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.94 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 123 132 0.08948840 0.09574737 0.09331325 2 -4.386680 120.4156 3 2 133 142 0.09644277 0.10270153 0.10026765 2 -33.409367 263.8147 5 2 420 429 0.29824991 0.30451337 0.30207759 3 -33.404336 269.2698 6 4 430 439 0.30520877 0.31146869 0.30903412 3 -4.382164 122.2763 7 5 440 449 0.31216421 0.31842341 0.31738016 NA -15.317219 178.3794 8 3 450 459 0.31911878 0.32538194 0.32433856 3 -15.868039 216.1389 10 4 720 729 0.50696192 0.51322188 0.51078751 2 -4.351906 124.3189 11 2 730 739 0.51391725 0.52018038 0.51774286 2 -33.364633 266.3401 13 2 1014 1023 0.71565741 0.72191687 0.71948254 3 -33.335258 265.6378 14 4 1024 1033 0.72261241 0.72887173 0.72643776 3 -4.334234 118.5044 15 3 1034 1043 0.72956722 0.73582708 0.73478396 3 -15.809023 215.6283 17 4 1308 1317 0.92433038 0.93059005 0.92815554 2 -4.304602 123.7016 18 2 1318 1327 0.93128533 0.93754424 0.93511032 2 -33.310086 265.4046 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.153220 1.280741 -0.0016961644 0.005473281 0.004223187 4.395588 3 1.153256 1.280786 -0.0040545079 -0.709566822 0.010642288 2.376996 5 1.153824 1.281634 -0.0004329567 0.700124828 0.002027417 1.814508 6 1.153794 1.281610 0.0009262981 0.603560276 0.004407651 1.802199 7 1.153699 1.281662 -0.0025589814 -1.087422835 0.001811961 6.517929 8 1.153819 1.281644 0.0021670639 -0.221861437 0.007640495 2.386643 10 1.155615 1.283794 0.0013846928 0.594046706 0.004322130 2.608411 11 1.155675 1.283869 -0.0035642942 -0.730934115 0.011034617 3.568315 13 1.157850 1.286405 0.0012950935 0.100258503 0.005754408 3.001153 14 1.157726 1.286264 -0.0009479859 -2.233628502 0.005299380 5.537106 15 1.157705 1.286284 0.0038430704 0.958204274 0.011242604 1.453272 17 1.160070 1.288996 0.0015800737 2.078019688 0.004104105 5.725420 18 1.160009 1.288947 -0.0042355868 0.023459909 0.011200483 2.674853 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 408.383 co2l1 = 0.952 co2l0 = 0.015" [1] "co2l0 = -140.71 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "46 out of 175 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "129 out of 1211 1-min values rejected as stack air" [1] "129 out of 1211 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"