[1] "2025-04-29 23:43:29 MDT" [1] "1504" "150421" "d111" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150421a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:43:33 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.864, ave o2scale2 = 0.778" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "43 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.864, ave o2scale2 = 0.778" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "45 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:43:34 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:43:34 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:43:55 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:43:56 MDT" [1] "reading in recalculated plot titles" [1] "Removed 45 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1391 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:44:01 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.953 co2off = 413.83 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.63 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 4 1 10 0.002528848 0.008788194 0.006354319 2 -4.280266 116.6442 2 2 11 20 0.009483796 0.015743316 0.013309324 2 -33.279055 265.0800 4 2 292 299 0.212597309 0.217465856 0.215727286 3 -33.305688 258.9841 5 4 300 308 0.218161343 0.224420573 0.221837471 3 -4.300239 126.5624 6 3 309 318 0.225116001 0.231375723 0.230332595 3 -15.756188 209.9356 8 4 586 595 0.419892361 0.426155353 0.423720678 2 -4.268437 127.7522 9 2 596 605 0.426850839 0.433110590 0.430676411 2 -33.265766 266.0757 10 5 606 615 0.433806047 0.440066667 0.439023018 NA -15.136844 183.2437 13 2 868 877 0.628586169 0.634845370 0.632411299 2 -33.371047 264.6297 14 4 878 883 0.635540885 0.641105353 0.640062080 2 -4.357962 119.5354 17 4 1161 1170 0.837256944 0.843520081 0.841083427 2 -4.440602 122.2070 18 2 1171 1180 0.844215365 0.850478270 0.848042972 2 -33.460766 270.1004 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.162621 1.290879 0.0003997625 -0.98146629 0.002597593 4.973520 2 1.162568 1.290792 -0.0002906842 0.67826938 0.007318903 5.071949 4 1.162720 1.291090 0.0013551277 0.32027283 0.003327912 4.421249 5 1.162727 1.291034 0.0041039875 3.53510800 0.011567919 10.068058 6 1.162809 1.291152 0.0039180355 1.31070038 0.009787816 1.809155 8 1.162799 1.291348 0.0027130853 -1.26305695 0.006701296 5.484058 9 1.162620 1.291182 -0.0027769047 4.01378086 0.008298542 10.117011 10 1.162391 1.290946 -0.0028080539 5.77242207 0.001988738 7.620659 13 1.156804 1.284257 -0.0018009230 -0.26582317 0.005803108 3.243243 14 1.156697 1.284126 0.0018271145 -5.25323624 0.003897569 6.862524 17 1.151333 1.277691 0.0004427588 -1.76240066 0.003304984 4.761620 18 1.151056 1.277356 -0.0019412284 0.08741682 0.005918508 1.384403 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 408.362 co2l1 = 0.952 co2l0 = 0.039" [1] "co2l0 = -141.27 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "62 out of 315 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "253 out of 1219 1-min values rejected as stack air" [1] "253 out of 1216 Line 1 1-min values rejected as stack air" [1] "0 out of 3 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"