[1] "2025-04-29 23:41:46 MDT" [1] "1504" "150418" "d108" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150418a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:41:51 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.857, ave o2scale2 = 0.772" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "19 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.857, ave o2scale2 = 0.772" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "19 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:41:51 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:41:51 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:42:13 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:42:14 MDT" [1] "reading in recalculated plot titles" [1] "Removed 19 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 105 row(s) with high TFRIDGE" [1] "TEMP: 1312 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:42:18 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.953 co2off = 408.24 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 238 247 0.1657370 0.1720035 0.1695663 2 -4.142680 130.3617 3 2 248 257 0.1727250 0.1789849 0.1765505 2 -33.154773 270.4284 5 2 535 544 0.3744975 0.3807570 0.3783226 3 -33.127258 269.5051 6 4 545 554 0.3814545 0.3877237 0.3852861 3 -4.141555 126.4407 7 3 555 564 0.3884200 0.3946793 0.3936360 3 -15.614203 221.4988 9 4 828 837 0.5831996 0.5894627 0.5870277 2 -4.149875 121.8255 10 2 838 847 0.5901581 0.5964177 0.5939833 2 -33.149258 267.7213 11 5 848 857 0.5971132 0.6033728 0.6023296 NA -15.022563 182.2745 16 2 1128 1137 0.7918762 0.7981354 0.7957011 3 -33.228172 268.0005 17 4 1138 1147 0.7988308 0.8050933 0.8026592 3 -4.230195 122.3359 18 3 1148 1157 0.8057887 0.8120481 0.8110050 3 -15.711945 213.0758 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.170274 1.300649 -0.0005956638 -0.3445871 0.004953178 4.194502 3 1.170398 1.300792 -0.0012249028 -0.7154415 0.007333946 2.955501 5 1.171442 1.302222 -0.0037818086 1.0589106 0.009339184 3.636516 6 1.171153 1.301905 0.0007063422 1.0280792 0.002726244 7.138740 7 1.171035 1.301756 0.0025093830 2.9080823 0.007472251 3.852867 9 1.167539 1.295901 0.0005884626 0.1860724 0.002804652 2.622636 10 1.167516 1.295888 -0.0033480436 0.3212202 0.008599564 3.995238 11 1.167290 1.295701 -0.0023719362 1.7296612 0.001679379 2.375053 16 1.162096 1.289634 -0.0016285050 -0.6464418 0.005143992 2.325601 17 1.161916 1.289435 0.0024211829 1.0326923 0.006512217 3.792632 18 1.161782 1.289260 0.0040881807 0.7677931 0.010200470 2.581556 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 408.208 co2l1 = 0.952 co2l0 = 0.012" [1] "co2l0 = -141.55 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "120 out of 375 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "255 out of 1145 1-min values rejected as stack air" [1] "197 out of 944 Line 1 1-min values rejected as stack air" [1] "58 out of 201 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"