[1] "2025-04-29 23:41:03 MDT" [1] "1504" "150417" "d107" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150417a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:41:07 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.859, ave o2scale2 = 0.773" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "16 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.859, ave o2scale2 = 0.773" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "19 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:41:08 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:41:08 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:41:32 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:41:33 MDT" [1] "reading in recalculated plot titles" [1] "Removed 19 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1417 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:41:42 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.953 co2off = 413.73 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.88 minutes" [1] "Shortest Cal: 7.02 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [5,] 12 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 169 178 0.1222465 0.1285058 0.1260716 3 -33.214609 266.2209 3 4 179 187 0.1292014 0.1354642 0.1330777 3 -4.204713 124.1200 4 3 188 195 0.1361598 0.1410319 0.1406842 3 -15.684479 218.5222 6 4 460 469 0.3309515 0.3372115 0.3347771 2 -4.194234 117.5477 7 2 470 479 0.3379069 0.3441663 0.3417320 2 -33.207555 269.4749 8 5 480 489 0.3448623 0.3511250 0.3500790 NA -15.086406 180.6810 10 2 760 769 0.5396898 0.5459500 0.5435153 3 -33.222383 271.8125 11 4 770 779 0.5466454 0.5529046 0.5504705 3 -4.214359 123.4988 12 3 780 789 0.5536000 0.5598597 0.5588165 3 -15.700617 219.4456 14 4 1057 1066 0.7483819 0.7546412 0.7522070 2 -4.209594 126.8742 15 2 1067 1076 0.7553368 0.7615960 0.7591616 2 -33.218469 274.8830 17 2 1356 1365 0.9570394 0.9632991 0.9608649 3 -33.194453 261.1008 18 4 1366 1375 0.9639944 0.9702537 0.9678196 3 -4.183625 140.7911 19 5 1376 1385 0.9709491 0.9772123 0.9761680 NA -15.037781 182.7756 20 3 1386 1395 0.9779076 0.9841670 0.9831237 3 -15.656703 218.9646 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.163698 1.293210 0.0003448406 -0.05902095 0.002716466 3.0591791 3 1.163706 1.293202 -0.0012350627 0.29516109 0.004423106 5.1459976 4 1.163740 1.293249 0.0044729790 -1.07016083 0.009058375 0.7577900 6 1.163131 1.292567 0.0020057576 -1.06673592 0.005870225 4.7883910 7 1.163228 1.292670 -0.0043882445 -1.43427191 0.011201156 4.7860066 8 1.163150 1.292586 -0.0026695915 -0.40310574 0.001900349 0.8179266 10 1.163579 1.293069 0.0006322403 1.70436243 0.002472717 4.7633516 11 1.163568 1.293057 0.0014665136 0.21841142 0.005989924 3.4011074 12 1.163730 1.293229 0.0043242116 -1.61421004 0.011307662 4.7056737 14 1.163841 1.293277 0.0004056983 -0.54045278 0.002327293 4.9298763 15 1.163918 1.293390 -0.0030592222 -3.12970036 0.008394234 15.3347461 17 1.167694 1.297715 0.0003178997 -5.28548834 0.002765732 18.7543846 18 1.167717 1.297918 0.0034994638 0.72096999 0.009587997 20.0820216 19 1.167787 1.297857 -0.0016852530 -0.78646232 0.001193243 3.9920673 20 1.168077 1.298186 0.0016717066 1.87413906 0.004734673 2.8784536 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 408.239 co2l1 = 0.952 co2l0 = 0.015" [1] "co2l0 = -142.52 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "61 out of 290 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "229 out of 1213 1-min values rejected as stack air" [1] "229 out of 1213 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"