[1] "2025-04-29 23:40:22 MDT" [1] "1504" "150416" "d106" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150416a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:40:26 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.86, ave o2scale2 = 0.773" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "161 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.86, ave o2scale2 = 0.773" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "161 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:40:27 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:40:27 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:40:50 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:40:51 MDT" [1] "reading in recalculated plot titles" [1] "Removed 161 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1275 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:40:59 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.952 co2off = 413.71 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.17 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 111 120 0.07857691 0.08484028 0.08240442 2 -4.131867 122.6953 3 2 121 129 0.08553588 0.09179482 0.08931097 2 -33.127259 271.7411 4 5 130 139 0.09249013 0.09874991 0.09770658 NA -14.974469 180.1392 6 2 397 406 0.28733912 0.29359873 0.29116442 3 -33.188789 272.2771 7 4 407 416 0.29429407 0.30055411 0.29811964 3 -4.188648 123.3850 8 3 417 426 0.30124954 0.30751273 0.30646872 3 -15.671086 213.0022 10 4 689 698 0.49606829 0.50232789 0.49989350 2 -4.238188 107.9018 11 2 699 708 0.50302329 0.50928666 0.50685008 2 -33.251086 272.2729 13 2 943 948 0.70475440 0.70823258 0.70718886 2 -33.283797 272.1625 14 4 949 954 0.71170964 0.71658215 0.71518920 2 -4.256516 129.9269 17 4 1167 1172 0.91343660 0.91691435 0.91587108 2 -4.225766 122.4881 18 2 1173 1181 0.92039135 0.92595920 0.92387273 2 -33.253375 269.4833 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.169328 1.299371 0.0026740637 0.6017414 0.006968234 4.579469 3 1.169443 1.299498 -0.0001503581 1.5330928 0.003903987 8.550921 4 1.169532 1.299538 -0.0023089404 -0.5557977 0.001635184 1.234575 6 1.166392 1.296127 -0.0010688761 0.4241336 0.003997340 1.880069 7 1.166244 1.295977 0.0013155577 0.5021774 0.006909083 4.720775 8 1.166054 1.295753 0.0015948082 -2.6695043 0.004890992 6.892082 10 1.161384 1.291042 0.0013506044 -1.1142179 0.003514797 19.461612 11 1.161296 1.290943 -0.0031014056 0.4740816 0.008056714 6.281234 13 1.159261 1.288437 -0.0035242730 1.1000089 0.004565032 1.677850 14 1.159532 1.288747 0.0068035661 1.1555010 0.014795602 4.683065 17 1.161726 1.291062 0.0007676322 -1.9287107 0.001063572 3.187994 18 1.161124 1.290346 -0.0034144454 1.4660347 0.007965011 7.494686 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 408.248 co2l1 = 0.952 co2l0 = 0.01" [1] "co2l0 = -139.56 co2l1 = 0.213" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "88 out of 345 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "257 out of 1110 1-min values rejected as stack air" [1] "257 out of 1110 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"